Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00157 ATGAATTGGAACACTACTTCAACAAGCACGAGCAACAAGAAGTTAAAGGGAGTTAGGCGTCGAAAATGGGGGAAATGGGTATCGGAGATTCGTGTTCCGGGGACTCAAGAACGTTTATGGTTAGGAACTTATGCTACACCGGAAGCTGCTGCGGTGGCACACGACGTAGCTGTTTATTGTTTAAGAAGACCTTCTACGTTGGACAAACTCAACTTTCCTGAGACTCTGTCTTCTTATTGTATTCAACAGAGAGATGATTTGATGTCTCCGAGGTCTGTTCAAAAGGTTGCTTCTGATGTTGCCATGGATGTTGATGCGAGAAATATTGCAAGGGaaacaacaactttgatggaaacgaatcacgtgagtgggaatgatgatgatgatgatggtcacgtgcatcataatgttgttggtgatgatgattGGTGGGAAGGTTTGGATGATGACTTGAGTTGGCAAGGAATTACTCAAGTTTCTAGACAAGAGGAGGGATTGAGTATTTCCATTGAAGATTATCTTCAGATTTAG 531 0.3559 MNWNTTSTSTSNKKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLRRPSTLDKLNFPETLSSYCIQQRDDLMSPRSVQKVASDVAMDVDARNIARETTTLMETNHVSGNDDDDDGHVHHNVVGDDDWWEGLDDDLSWQGITQVSRQEEGLSISIEDYLQI 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00157 176 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Car08g00157 176 ProSiteProfiles AP2/ERF domain profile. 14 73 IPR001471 GO:0003700|GO:0006355
Car08g00157 176 CDD AP2 13 75 IPR001471 GO:0003700|GO:0006355
Car08g00157 176 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Car08g00157 176 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Car08g00157 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 124 - -
Car08g00157 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 7 124 - -
Car08g00157 176 SUPERFAMILY DNA-binding domain 14 73 IPR016177 GO:0003677
Car08g00157 176 SMART rav1_2 14 79 IPR001471 GO:0003700|GO:0006355
Car08g00157 176 Gene3D AP2/ERF domain 14 75 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00157 Car-Chr8 1231947 1232740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00157 10 106 AP2-EREBP Transcription Factor Family AT1G71520 60.606 1.15e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car08g00157 AP2 5.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00157 - - mtr:MTR_5g008790 233.032