Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00148 ATGAACATGTCTTCTAGTGGTGCTGCTAGTTCTGCATACAGAGGAGTTCGCAAGAGAAAATGGGGAAAATGGGTTTCTGAAATCCGTGAGCCAGGTACAAAGACAAGAATTTGGTTAGGAAGCTTCGAGACACCGGAGATGGCCGCGGCCGCTTACGACGTTGCCGCGCTACATTTCAGGGGACGTGAAGCAAGACTCAATTTCCCCGAACTCGCATCGTCACTTCCCCGTCCTTTAAGCAACAATGCCGACCATATACGAATGGCCGCACACGAAGCTGCCTTGAGGTTGAGAACCAATACACTGATGCCACCAGAGAACAACAGTGGAACAGACTCAGTAACTGACTGTTCCACTGATGTGGTGGCACCTCTCACTGTGAGACTCTCGTCTACTCAAATTCAAGCTATTAATGATTCGCCTATGGATTCACCTCCTACATGGATGCAAATGTCACACCCTTTTATGATGGATGATCAAACCATGTATTTTGGTAATGGGTATGAATTTGAAGAGAACGAGTGGGAGAATATGCAACACAGTGATTCTCTTTGGGATCCTTAG 564 0.4699 MNMSSSGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGREARLNFPELASSLPRPLSNNADHIRMAAHEAALRLRTNTLMPPENNSGTDSVTDCSTDVVAPLTVRLSSTQIQAINDSPMDSPPTWMQMSHPFMMDDQTMYFGNGYEFEENEWENMQHSDSLWDP 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00148 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 186 - -
Car08g00148 187 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Car08g00148 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 3 186 - -
Car08g00148 187 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Car08g00148 187 PRINTS Ethylene responsive element binding protein signature 35 51 IPR001471 GO:0003700|GO:0006355
Car08g00148 187 SMART rav1_2 12 75 IPR001471 GO:0003700|GO:0006355
Car08g00148 187 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Car08g00148 187 SUPERFAMILY DNA-binding domain 11 70 IPR016177 GO:0003677
Car08g00148 187 Pfam AP2 domain 12 61 IPR001471 GO:0003700|GO:0006355
Car08g00148 187 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00148 Car-Chr8 1165741 1167047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00148 11 187 AP2-EREBP Transcription Factor Family AT1G71450 62.147 6.71e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car08g00148 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00148 - - gmx:100815719 288.885