Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00141 ATGAATATGATACTTATTGCTATGCTGCGTTCCAAAAACCTTGTACGCCATGTATTCCCCAAACGTTGTATGTTTCACAATCTCTACACTTCAACTACACAACCAGATCCACAAACCATAGCCACAAACGTAAACACACAAATACGTACTCTTTCCTTACAAGGTAATCTTGAAGAAGCACTTTCACTTGCTTACACTCACTCTTCTCTAACACTTCAAGACTATGCCTTTCTCTTCCATGCTTGTTCTCAGAAAAAGTACATTCAACAAGGCATTAAACTGCACCGTTACATAATTGAAAAACAACCCACAATTCAAAATGATCTCTTTATCACAAATAACCTCCTAAACATGTACTGCAAATGTGGCCAATTAGATTATGCTCGCTACCTGTTTGATAAAATGCCAAGGAGAAACTTTGTTTCTTGGACTGTTCTCGTTTCTGGGTATGCTCAATCTGGTTTAATCAGAGAGTGTTTTTCGCTGTTTTCTGGCATGTTGGCTTATTTTCGTCCCAATGAATTTGCGTTTGCAAGTGTGCTCAGTGTTTGTGAGCAGCGTGATATCGAATATGGCTTGCAGGTACATGCTGTTGCTTTGAAAATGTCGTTGGATGTCAATGTGTATGTTGCAAATGCCCTTATTACAATGTATAGCAAGTGTTCTGGTGGTTTCGGTGGAGGTTATAATCAAACTTCGGATGATGCGTGGGCTGTTTTCAAGTCAATGGAGTATAGAAATCTTATATCTTGGAATTCGATGATTTCAGGTTTTCAATTCCGTGGACTTGGGGACAAAGCTATTGGCCTGTTTGCATATATGTATAGCAATGGAATTGGGTTTAACTGTGCCACATTACTCGGTGTTTTGTCGTCGTTGAATCAATGCAGTACTTTGGAAGATGACATCAACAACACATATCTCAGGAACTATTTTCAATTGCACTGTCTCGCTATTAAAAGTGGTCTTATTTCAGAAGTTGAAGTGGTAACTGCATTGGTAAAATCCTATGCAAATCTAGGGGATCACATTTCTGACTGTTATAAGCTCTTTCTCGATACGAGTGGTCGACATGATATTGTGTCATGGACTGCTATTATTTCCGCGTTTGCAGAACAGGATCCTGAGCAGGCTTTCCTTCTTTTCTGTCAACTTCATTTGGAAAATTTTGTGTTGGATCGACATACATTCTCAATCGCCTTAAAAGCTTGTGCGTACTTTGCGACGGAGCTAAATGCAATGGCAGTTCACTCACAAGTAATTAAACAAGGGTTTCAAGAAGaaacagttgtttcaaattccttgatacatgcttatgggaggtctggCTCCTTAGCTTTGTCTGAACAAGTATTTGACGAAATGGGTTGCCATGATTTGGTTTCTTGGAATTCAATGCTCAAGTCTTATGCCATGCATGGTCGAGCTAAAGATGCATTGGAGCTCTTCTCGCGAATGGATGTCCACCCAGATTCTGCAACTTTTGTTGCTCttctcactgcttgcagtcacgctggacttgttgaagaagggttgaagattttcaactctatgactgaaagtcatggtatttctccgcaattagatcactatgcctgcatggttgacctttatggacgagctgggcagatatttgaggcagaggagttgatacgcaaaatgccaatgaaacctgattctgtgatttggagttcactactcggatcttgcaggaagcacggcgaggctgaCTTAGCCAAATTGGCAGCGGATAAATTTAAAGAGTTAGAGCCTAAAAATTCGTTGGCGTATATACAAATGTCAAACATATATTCCTCCGGAGGTAGTTTTATTGAAGCTGGCTTGATGAGGAAGGAAATGAGAGACTCTAAAGTGCGAAAAAGACCTGGATTAAGCTGGGTTGAGGTTGGAAAGAAGGTTCATGAATTCACATCTGGTGGCCAACATCATCCAAAAAGAGGGGATATATCGAGCCAGCTTGAGATATTGATCATAAAATTGAAAGAAATAGGTTACGCTCCCATGACGAGCGCAGCTTTGCATGACATTGAAATTGCGCACATAGAAGACCAACTGTTTCATCATAGTGAGAAGTTGGCATTGGTATTTGCTATAATGAATGAAGGAATTTTGCCTTTTGGTGGGAGTGTCATTAAAATAATGAAGAATATCCGTATTTGTGTGGATTGTCATAACTTCATGAAATTAGCATCAAAACTATTTCAGAAGGAGATTGTTGTAAGAGATTCAAATCGCTTTCACCATTTCAAATATGCAACATGCTCTTGTAATGACTATTGGTAA 2304 0.3429 MNMILIAMLRSKNLVRHVFPKRCMFHNLYTSTTQPDPQTIATNVNTQIRTLSLQGNLEEALSLAYTHSSLTLQDYAFLFHACSQKKYIQQGIKLHRYIIEKQPTIQNDLFITNNLLNMYCKCGQLDYARYLFDKMPRRNFVSWTVLVSGYAQSGLIRECFSLFSGMLAYFRPNEFAFASVLSVCEQRDIEYGLQVHAVALKMSLDVNVYVANALITMYSKCSGGFGGGYNQTSDDAWAVFKSMEYRNLISWNSMISGFQFRGLGDKAIGLFAYMYSNGIGFNCATLLGVLSSLNQCSTLEDDINNTYLRNYFQLHCLAIKSGLISEVEVVTALVKSYANLGDHISDCYKLFLDTSGRHDIVSWTAIISAFAEQDPEQAFLLFCQLHLENFVLDRHTFSIALKACAYFATELNAMAVHSQVIKQGFQEETVVSNSLIHAYGRSGSLALSEQVFDEMGCHDLVSWNSMLKSYAMHGRAKDALELFSRMDVHPDSATFVALLTACSHAGLVEEGLKIFNSMTESHGISPQLDHYACMVDLYGRAGQIFEAEELIRKMPMKPDSVIWSSLLGSCRKHGEADLAKLAADKFKELEPKNSLAYIQMSNIYSSGGSFIEAGLMRKEMRDSKVRKRPGLSWVEVGKKVHEFTSGGQHHPKRGDISSQLEILIIKLKEIGYAPMTSAALHDIEIAHIEDQLFHHSEKLALVFAIMNEGILPFGGSVIKIMKNIRICVDCHNFMKLASKLFQKEIVVRDSNRFHHFKYATCSCNDYW 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00141 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Car08g00141 767 Pfam PPR repeat 531 555 IPR002885 -
Car08g00141 767 Pfam PPR repeat 141 167 IPR002885 -
Car08g00141 767 Pfam PPR repeat 249 279 IPR002885 -
Car08g00141 767 Pfam PPR repeat 113 140 IPR002885 -
Car08g00141 767 Pfam PPR repeat 432 456 IPR002885 -
Car08g00141 767 Pfam PPR repeat 461 486 IPR002885 -
Car08g00141 767 Pfam PPR repeat 494 521 IPR002885 -
Car08g00141 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Car08g00141 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 489 IPR002885 -
Car08g00141 767 Pfam DYW family of nucleic acid deaminases 671 767 IPR032867 GO:0008270
Car08g00141 767 Gene3D Tetratricopeptide repeat domain 187 313 IPR011990 GO:0005515
Car08g00141 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 526 IPR002885 -
Car08g00141 767 PANTHER - 35 676 - -
Car08g00141 767 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 35 676 - -
Car08g00141 767 SUPERFAMILY TPR-like 80 616 IPR011990 GO:0005515
Car08g00141 767 Gene3D Tetratricopeptide repeat domain 372 488 IPR011990 GO:0005515
Car08g00141 767 Gene3D Tetratricopeptide repeat domain 489 662 IPR011990 GO:0005515
Car08g00141 767 Gene3D Tetratricopeptide repeat domain 41 186 IPR011990 GO:0005515
Car08g00141 767 Pfam E motif 573 635 IPR046848 -
Car08g00141 767 TIGRFAM PPR: pentatricopeptide repeat domain 113 141 IPR002885 -
Car08g00141 767 TIGRFAM PPR: pentatricopeptide repeat domain 494 526 IPR002885 -
Car08g00141 767 TIGRFAM PPR: pentatricopeptide repeat domain 141 167 IPR002885 -
Car08g00141 767 TIGRFAM PPR: pentatricopeptide repeat domain 461 486 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00141 Car-Chr8 1116056 1118445 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00141 70 767 Glycoside Hydrolase AT3G49170 35.344 8.99e-134 415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00141 08 1116056 1118445 Car04g01274 04 13060796 13067460 PCT