Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00120 ATGGAATTCCTAAACTCCATAAAGCAAGTAGCTGGAAACTTGGTTACAAAAGTGGAGGATCTGTTTTCATTACAACTTTTACGAATATTTGATGCTAATAACTCAGAAATTCTCCCCTTGAATGATACGTGGACGAATTGTCCATTCAAAGGTTGTTCAGTTTTGTTGTTGAATGAAGGGATTGAGTTTGTGACAAATGTTGAATGTCCCTCTTGTCATGGGTTGTTTTGTGCACAATGTAATGTTCCATGGCATGTAGGACTCACTTGTCAAGAATTCCAATTCCAAAGAAAACATAAATGTTTTGCGGGTGATTCCCAAAACCACATTCCAAAGAAGAGAAAATCTTTCTTTGAAGATTGtgagaatgacgaaaacaataagaatgagaaaaagaaGAAAAAACTCAGCATTATCACTGAGTCCAATAACCAAGTGGTGGCTACTCTTCTACTAAAGTTGAAAGGGATTCTCAAACGCTCAAAGTATGTCCCAAACTATTTTGGGAGTTTTCCACAGTCTCCAAAATCCTTTTGTGGCATATGTTTTGATTTCATACAAGAGCATTGTATTGCCAAAGGAAGTACCACATGCAATCACCTCTTTTGTGCCAATTGTATATCTAAGCACGTGGCTACTCATCTAAGCCAAAATATAATTAAGGTTTATTGTCCAAATCCAAACTGTTATGGGGAGCTTAAGCCACGACATTTGCAACACATTTTGCCTAAAGAGGTCATTGATCGATGGGAATCAGCAATACTCGACTCTACCACTGCTTGGTGA 786 0.3626 MEFLNSIKQVAGNLVTKVEDLFSLQLLRIFDANNSEILPLNDTWTNCPFKGCSVLLLNEGIEFVTNVECPSCHGLFCAQCNVPWHVGLTCQEFQFQRKHKCFAGDSQNHIPKKRKSFFEDCENDENNKNEKKKKKLSIITESNNQVVATLLLKLKGILKRSKYVPNYFGSFPQSPKSFCGICFDFIQEHCIAKGSTTCNHLFCANCISKHVATHLSQNIIKVYCPNPNCYGELKPRHLQHILPKEVIDRWESAILDSTTAW 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00120 261 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 39 121 - -
Car08g00120 261 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 129 257 - -
Car08g00120 261 SUPERFAMILY RING/U-box 176 257 - -
Car08g00120 261 ProSitePatterns Zinc finger RING-type signature. 198 207 IPR017907 -
Car08g00120 261 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 39 121 IPR031127 GO:0004842|GO:0016567
Car08g00120 261 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 129 257 IPR031127 GO:0004842|GO:0016567
Car08g00120 261 SMART ibrneu5 27 90 IPR002867 -
Car08g00120 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 260 IPR013083 -
Car08g00120 261 Pfam IBR domain, a half RING-finger domain 39 90 IPR002867 -
Car08g00120 261 SUPERFAMILY RING/U-box 38 94 - -
Car08g00120 261 ProSiteProfiles Zinc finger RING-type profile. 179 225 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00120 179 257 C3H Transcription Factor Family AT2G31760 28.395 8.94e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00120 K11975 - mtr:MTR_5g007670 223.016