Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00112 ATGATGAGAACACCAATTAGCATTAATGATGAAAATGGTTTGAAGAAAGGTCCATGGAGTCCAGAAGAAGATAAAATATTAGTGGATCATATTCAGAAACATGGTCATGGAAGTTGGAGAGCTCTTCCAAGGCTTGCAGGATTGAACAGATGTGGAAAGAGTTGCAGATTAAGATGGACTAATTATCTAAGGCCTGATATTAGAAGAGGAAATTTTTCTGATCAAGAAGAAAATCTCATTATCAATTTACATGCACTTCTTGGAAATAAGTGGGCAGCTATAGCAACACATCTTCCAGGAAGGACTGATAATGAAATAAAGAATTTTTGGAACACACATTTGAAGAAAAAGCTAATGCAAATGGGTTTAGATCCAGTGACACACAGGCCAAGAACAGATCACCTAGACCTTCTTAACAATCTACAACAGATAATATTGAATGCTGCAAATATTGTCACAAATTGTGACATAAATAATAATGCTCTAATTAGGCTACAACAACTCATGACTCTTTCTTCAAACTCATCACAAAGTTTGATAAATGATGTTTTTGGAATtaataataataataataCTCACTCCAATAATTACCTACAAAACTTTTATGATGGTTCCAATATTGGTTTTTCTTCTTCTCAAATAATTGAGCCTAATTTGCAAAACTTTGAAGACCCTCTTCAGCAATTAGTACCACAAGCATGTAGGTATCAAGAGTACTTGAATGGAGATTTTACAAATGTTGCTGCCTCAACAATATCATCAAGTTTGCTTCCAAATTTGGTTTCAGTTTCGCATCGATGTGATTCGCCTGTTAAGGTAGAAGAAGATAACATGATGAAAAATGCAAAAGAATGTTGTAGTCCTTCTTCTACCACCTTAGAAACTTGGGGAGATTTCATGAATGAGGATGCAAATGATGCTTATTGGAAAGATTTCATTGAACAACATGCTAGCCAACCATAG 963 0.3448 MMRTPISINDENGLKKGPWSPEEDKILVDHIQKHGHGSWRALPRLAGLNRCGKSCRLRWTNYLRPDIRRGNFSDQEENLIINLHALLGNKWAAIATHLPGRTDNEIKNFWNTHLKKKLMQMGLDPVTHRPRTDHLDLLNNLQQIILNAANIVTNCDINNNALIRLQQLMTLSSNSSQSLINDVFGINNNNNTHSNNYLQNFYDGSNIGFSSSQIIEPNLQNFEDPLQQLVPQACRYQEYLNGDFTNVAASTISSSLLPNLVSVSHRCDSPVKVEEDNMMKNAKECCSPSSTTLETWGDFMNEDANDAYWKDFIEQHASQP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00112 320 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Car08g00112 320 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Car08g00112 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 316 - -
Car08g00112 320 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Car08g00112 320 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Car08g00112 320 SMART sant 68 116 IPR001005 -
Car08g00112 320 SMART sant 15 65 IPR001005 -
Car08g00112 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Car08g00112 320 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Car08g00112 320 CDD SANT 71 114 IPR001005 -
Car08g00112 320 PANTHER MYB TRANSCRIPTION FACTOR 2 316 - -
Car08g00112 320 CDD SANT 18 63 IPR001005 -
Car08g00112 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Car08g00112 320 Gene3D - 71 118 - -
Car08g00112 320 Gene3D - 15 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00112 Car-Chr8 862306 863871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00112 1 320 MYB Transcription Factor Family AT3G02940 46.061 5.45e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car08g00112 Myb_DNA-binding 6.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00112 K09422 - gmx:102660452 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00112 08 862306 863871 Car06g02037 06 20344409 20346102 ECH
Car08g00112 08 862306 863871 Car08g00112 08 862306 863871 ECH