Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00084 ATGGACACGCCAGAGAGGAACCAGATCAACACTACCCTCTCTAAATTTGAGGATTCACCAGTATTCAACTATATCAACAATTTATCTCCTATAAGGCCTGTTAAGTCTGTTCACATTACTCAGACATTCAATTCACTTAGCTTTTCATCCCCTCCATCTGTTTTCACTTCACCCCATGTCAGCTCTTTCAAGGAGTCTAGATTCCTAAGGAGACATATCTTACTTGACACATCAAAGCCTAAGGATTCAAGTGAAGATGTAAATAATAAAGTCTACTCAAGTGAAGAGGCTATTGCAGATTCTACTCTTTCACATCTTAACACAAATGAATTACATGAAAGTTCTGATCAAGGGATATCAGTAGGAAATGGTTCAGTTGAGTTATCTAGTGAACATGCAAAATTCTCAGATGAGTTACCACAGGCTTTACAGTATAATTGTGGTAGTCCTAGCTATGATCCTCCACTTTGTGCTGATGAGGCTAATTCTCTTTTGGAATTGCCGGGCGAAGGTGTATCAGATGCTGCCTATGTTCCAGATGGTTGTAAAACAGATTCGATTGAGTCTGAGTTGCATCTACAAGGACCAAGTCAGATCGATCCAAAGGAAGAAGGCGCAGACTGTGATTGGGCTGGTTTAATTCCCAATGCCGCTGATCTGTTAATTGAAGCAGAAGCAGAAGCTTTTAAGGGTCTAATGCAGAAACCTTCGGGCTCTTCTATACGACTTAGCGATTTTATGCCCCTGCTTCAGCAATCTACTAACAATAATGATCAGAAAATGTACATGATTAAATCCGTTGCTTCTGGTTCTGAACATGAAATTGAAAATCATTGTTCTGAACCAGTTGCCTTGGCAGATACTGACCATATACAGGACAATCTTGCTAGTGGTTCTTTAATGACTAGCAATCCGAATGAGCAAATGGATGACAAGCTTGTTTCTGTCACGCACCGTGGTATCCGGAGGCGCTGTCTTGACTTTGAAATGGCCAGTGTGCGAAGGAAGAACTCAGATGATAATTCAAAAACCGGCTCTAGTACAACACAGTCTGAAGTAAGCAATGCTGCTAATGAAAAACAACTGCTCCCTACAAAGCGCAATGCAGATTCACAGAGGTGCATTTTGCCGGGTATCGGTTTACACTTGAATGCACTTGCCACCTTAAAGGATCACAAAGGCTTACAAAACGAAAAGTTGACTTCTGGAAGACAACTCAGCCTGTCCAACTCTACTTCCTTGCTACTCTCTACATGCCATGAACATCAGCATCTGTCGGTCTTATCTGTATCAATATCATCTGAAAGAGAATTGGACCCATCAGACAATGGGGTTCAGCCTACTGAAGATTGTTCACAGGCATCAGCTTACATGGCTGGTGAAGATTTCAACCAGAATAGCCCTAAAAAGAAAAGGCGTAAGTCAGAGCCAGCTGGAGAAATTGAGGGCTGCAAACGCTGTAATTGCAAGAAATCAAAGTGCTTGAAGCTTTATTGTGAGTGTTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGAATGCTTCAACAAACCTATTCATGAAGATACTGTTCTTCAAACTCGCAAGCAAATTGAATCTCGCAACCCTCTTGCATTTGCTCCTAAAGTCATCCGAAGTTCTGAGTCTGTGCCTGAAGTTGGGGATGACCCAAACAAAACTCCAGCTTCAGCACGGCATAAAAGAGGGTGCAACTGCAAGAAATCAAGCTGCCTTAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGTTGCTCCATTAGCTGCAGATGTGAAGGATGCAAGAACGCATTTGGCAGAAAGGATGGGTCTGCTATTACGGAGATGGTCGAAGGTGAGACAGAAGAAGAAACAGAAACAAGTGACAAGGGTGTGGCAGAAAAAGCTATTCAGAAAACTGAAATTCAGAGTATTGAAGATCATCCGGATTCTGCTGCTGTCTCAACACCATTACGGCTTTCCAGACCATTGCTTCCAATGCCCTTCTCATCAAAGGGAAAGCCACCAAGATCTTTCGTTACAACTATTACTGGTTCTGGATATTTTGCCAGCCAAAAGCTTGCGAAACCAGATTCTCTTTGGCCTCAATCTAAGCCTTTTCAGACTGTTCCAGACAACGAAATGCCAGAGATTCTCCGTGGTGATAGCTCTCCTATCGCGTGCATCAAAACTTCTTCTCCCAATGGCAAGAGGATCTCTTCTCCTAACTGTGAAATGGGATCATCTCCAAGTCGCAGAGGTGGCAGGAAATTGATATTACAATCTATTCCTTCATTTCCTTCTCTCACACCACACCCTTAG 2328 0.4274 MDTPERNQINTTLSKFEDSPVFNYINNLSPIRPVKSVHITQTFNSLSFSSPPSVFTSPHVSSFKESRFLRRHILLDTSKPKDSSEDVNNKVYSSEEAIADSTLSHLNTNELHESSDQGISVGNGSVELSSEHAKFSDELPQALQYNCGSPSYDPPLCADEANSLLELPGEGVSDAAYVPDGCKTDSIESELHLQGPSQIDPKEEGADCDWAGLIPNAADLLIEAEAEAFKGLMQKPSGSSIRLSDFMPLLQQSTNNNDQKMYMIKSVASGSEHEIENHCSEPVALADTDHIQDNLASGSLMTSNPNEQMDDKLVSVTHRGIRRRCLDFEMASVRRKNSDDNSKTGSSTTQSEVSNAANEKQLLPTKRNADSQRCILPGIGLHLNALATLKDHKGLQNEKLTSGRQLSLSNSTSLLLSTCHEHQHLSVLSVSISSERELDPSDNGVQPTEDCSQASAYMAGEDFNQNSPKKKRRKSEPAGEIEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSSESVPEVGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSAITEMVEGETEEETETSDKGVAEKAIQKTEIQSIEDHPDSAAVSTPLRLSRPLLPMPFSSKGKPPRSFVTTITGSGYFASQKLAKPDSLWPQSKPFQTVPDNEMPEILRGDSSPIACIKTSSPNGKRISSPNCEMGSSPSRRGGRKLILQSIPSFPSLTPHP 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00084 775 MobiDBLite consensus disorder prediction 332 368 - -
Car08g00084 775 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 774 IPR044522 GO:0003700
Car08g00084 775 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 485 520 IPR005172 -
Car08g00084 775 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 571 606 IPR005172 -
Car08g00084 775 ProSiteProfiles CRC domain profile. 483 608 IPR005172 -
Car08g00084 775 MobiDBLite consensus disorder prediction 728 750 - -
Car08g00084 775 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 774 - -
Car08g00084 775 SMART CXC_2 482 523 IPR033467 -
Car08g00084 775 SMART CXC_2 568 609 IPR033467 -
Car08g00084 775 MobiDBLite consensus disorder prediction 342 368 - -
Car08g00084 775 MobiDBLite consensus disorder prediction 712 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00084 Car-Chr8 680121 685180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00084 1 774 CPP Transcription Factor Family AT3G22780 43.358 7.16e-160 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Car08g00084 TCR 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00084 - - mtr:MTR_5g006530 1249.96