Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00061 ATGCTGTCAAATCACATACATAACGGCATCGAAACGGCGAGACTCGCTTGGTCACAGATTCCGAACTCGGAGGAATCACAGTTCGTCGATGACGGCGTTGGCCTCCTTAAGAAAAACGATGGCAGCGCCGTTGAGAGTCTTGACTATGAAGTCATTGAGAATTTTGCTTATCGAGAAGAACAGGCGCACAGAAGAAGGAAACTGTACGTGAGTTACTTGCTGGTGGTGAAATGGTTCTTTGCGTTACTCATTGGCATTTGTACTGGACTTGCTGCTGTTTTCATCAATATTTCTGTTGAAAATTTTGCTGGCTGGAAGTACTCGGTGACATTTAATATAATTCAGAAATCATATGTTGCTGGATTTATCGTATATATCCTGATCAACTTGGTTTTAGTGTATTCCTCTGTATATATCGTCACACAATTTTCACCAGCAGCTGCTGGATCTGGTATTCCGGAAATCAAGGGTTACTTAAACGGAGTTGATACTCACGGCATCCTTCTTTTCAGAACTTTGATTGGAAAGATATTCGGAAGCATTGGTTCAGTGGGAGGAGGGCTTGCTTTGGGCAAAGAAGGTCCTCTAGTCCATACTGGTGCTTGTATTGCTTCATTGCTTGGACAACAGGGTGGATCTACTAAGTATCATCTAAATTCAAGGTGGTTTAATGTATTCAAAAGTGACCGGGATCGCCGTGATCTTGTAACTTGTGGGTGTGCAGCTGGAGTTGCTGCTGCATTTAGAGCTCCAGTTGGCGGCGTATTGTTTGCATTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTAATGTGGCGTGTCTTTTTCACTTCTGCTATTGTGGCTGTTGTGGTACGAACTGCGATGGGGTGGTGTAAGAGTGGAAAATGTGGACATTTTGGATCAGGCGGATTTATAATATGGGATGTATCAGAGTTAAGATCTGAGCTATCACCTTTTTTACTATCAGTTCAGAGTTTTCTTCCATTCCTCTTCTTGACTGGTTTTATTTTCAGTGGTCAAGAGGATTACTCGTTTGCAGAGCTATTTCCAATGGCAATTATTGGGGTTATTGGAGGTCTACTAGGAGCTTTATTTAACCAACTTACACTCTATATTACTACTTGGCGTCGAAATCGTCTTCACAAGAAAGGGAACCGAGTCAAGATCATTGAAGCATGCCTTGTCTCCGTTCTAACATCGGTCATTTCTTTTGGCTTGCCGCTTCTAAGAAAATGCAGTCCATGCCCTGAATCTGATCCTGCATCTAGTATTGAATGTCCACGACCTCCTGGAATGTATGGGAATTATGTTAATTTCTTTTGTAGCAAGGAAAACGAATACAATGATCTTGCTACTATTTTCTTCAACACACAGGATGATGCTATAAGGAATTTGTTCAGTGCCAAAACAATAAACGAGTACAGTTCCCAAAGTTTGTTAACCTTTTTGGTTATGTTTTATGCTTTAGCTGTTGTGACGTTTGGTACTGCCGTGCCGTCTGGTCAATTTGTTCCTGGTATTATGATAGGATCAACATATGGGCGTCTTGTTGGCATGTTCGTTGTTAAATATTACAGAAAACTCAACATTGAAGAGGGAACATATGCTTTGCTAGGAGCTGCATCATTTCTTGGAGGTTCAATGCGAATGACAGTGTCTCTATGTGTCATTATGGTTGAAATCACTAATAACTTGAAACTTTTACCCCTTATTATGCTTGTTCTTCTCATATCGAAGGCTGTTGGTGATGCTTTTAATGATGGCATCTATGATGAGCAAGCTCGATTGATGGGCATCCCATTACTAGAATCAAAGCCTAAATATGAGATGCGGAATATGACAGCAAAGGAGGCCTGTGGGAGTGGAAGGGTTGTCTCTCTCCCTCGTGTTGTTAAGGTTTCAGATGTAGTTTCCATTCTGCAGAGCAACAAACACAATGGCTTTCCGGTGATTGATCACACAAGAAGTGGAGAACGACTTGTGATTGGATTAGTGCTTCGGAGTCATTTATTGGTCATTCTGCAGTCTAAGGTTGATTTCCAGCATAGTCCATTACCCTCTGATCCAAGAAGTGCGGGAAGGTCAATAAGGCATGATTCTGGTGAATTCGCCAAGCCTGTTTCTAGTAAAGGAATATGTCTTGATGATATACATCTAACATCAGAAGACCTGGAAATGTACATAGATCTTGCCCCATTTTTGAATCCCTCACCATATATTGTACCGGAAGATATGTCTCTGACAAAGGTATACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTTCCTCGTCCATCACGTGTTGTTGGTTTGATAACCAGGAAAGATTTGTTAATTGAGGACGAAGAAAACATGAATACATTAGAGCTCCAGTCAGCTAGTGTAAGAATTGAGCATCAGATTAAAAGATTGACGACAAGGAATGCAGATGTGGAGCGTCCTTTGCTGAGCGACCTTCTGGCTTAG 2478 0.4161 MLSNHIHNGIETARLAWSQIPNSEESQFVDDGVGLLKKNDGSAVESLDYEVIENFAYREEQAHRRRKLYVSYLLVVKWFFALLIGICTGLAAVFINISVENFAGWKYSVTFNIIQKSYVAGFIVYILINLVLVYSSVYIVTQFSPAAAGSGIPEIKGYLNGVDTHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQQGGSTKYHLNSRWFNVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFGSGGFIIWDVSELRSELSPFLLSVQSFLPFLFLTGFIFSGQEDYSFAELFPMAIIGVIGGLLGALFNQLTLYITTWRRNRLHKKGNRVKIIEACLVSVLTSVISFGLPLLRKCSPCPESDPASSIECPRPPGMYGNYVNFFCSKENEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYALAVVTFGTAVPSGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNDGIYDEQARLMGIPLLESKPKYEMRNMTAKEACGSGRVVSLPRVVKVSDVVSILQSNKHNGFPVIDHTRSGERLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRSAGRSIRHDSGEFAKPVSSKGICLDDIHLTSEDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVVGLITRKDLLIEDEENMNTLELQSASVRIEHQIKRLTTRNADVERPLLSDLLA 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00061 825 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 822 - -
Car08g00061 825 SUPERFAMILY CBS-domain pair 608 782 IPR046342 -
Car08g00061 825 Gene3D - 622 789 IPR046342 -
Car08g00061 825 Pfam CBS domain 736 782 IPR000644 -
Car08g00061 825 Pfam CBS domain 626 675 IPR000644 -
Car08g00061 825 Pfam Voltage gated chloride channel 135 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car08g00061 825 SMART cbs_1 738 786 IPR000644 -
Car08g00061 825 SMART cbs_1 624 676 IPR000644 -
Car08g00061 825 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 822 - -
Car08g00061 825 SUPERFAMILY Clc chloride channel 61 605 IPR014743 -
Car08g00061 825 ProSiteProfiles CBS domain profile. 614 681 IPR000644 -
Car08g00061 825 CDD CBS_pair_voltage-gated_CLC_euk_bac 625 782 - -
Car08g00061 825 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car08g00061 825 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car08g00061 825 PRINTS Chloride channel signature 241 260 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car08g00061 825 PRINTS Chloride channel signature 534 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car08g00061 825 PRINTS Chloride channel signature 552 571 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car08g00061 825 PRINTS Chloride channel signature 590 604 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car08g00061 825 PRINTS Plant CLC chloride channel signature 294 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car08g00061 825 PRINTS Plant CLC chloride channel signature 276 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car08g00061 825 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car08g00061 825 PRINTS Plant CLC chloride channel signature 262 270 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car08g00061 825 Gene3D Clc chloride channel 70 604 - -
Car08g00061 825 CDD ClC_6_like 45 603 - -
Car08g00061 825 ProSiteProfiles CBS domain profile. 735 792 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00061 Car-Chr8 550703 560318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00061 1 800 Ion Channels AT5G26240 80.025 0.0 1225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00061 K05016 - gmx:100811908 1428.69