Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00059 ATGCATCTTCAACCGCCTCCTTTGCTTGAAAACGATCCCGTTCAGAAACCGTTGCCGTTTGAACACGAGGTTGAGAAAGGGAGTGCTTTCGCTCTTGGTCTTCTTGCCGTTAAGCCAGAACATCAACAACTCATTGTTGACAGTGGCGCCTTGAAGCATCTTGTTGATCTTTTGAAGAGACATAAGAATGGATTAACATCACGTGCCATTAATAGTCTCATTCGGAGGGCTGCAGATGCAATCACTAATCTTGCTCATGAGAATAGCAGTATTAAAACCCGTGTCAGGATGGAAGGTGGGATTCCACCATTAGTTAATTTGCTTGAATTTGCTGATACAAAAGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAGAATCAGATTGTTGAATGCGATGCGCTTCCAACTCTGATTCTGATGCTTCGGTCTGAAGACGCTGCTATTCATTATGAAGCGGTTGGTGTTATCGGAAATCTAGTCCACTCTTCCCCCAATATAAAGAAAGAAGTTATTCTTGCTGGAGCCTTGCAACCTGTTATTGGACTACTTAGCTCCTGTTGTTCTGAAAGCCAGAGGGAAGCAGCGTTGTTACTTGGACAGTTTGCAGCGACTGATTCAGACTGCAAGGTTCACATTGTTCAGAGAGGTGCTGTACGGCCTTTGATAGAGATGCTTCAGTCCCCTGATGTTCAGCTCAGAGAAATGTCTGCGTTTGCATTGGGGAGATTGGCCCAGGATGCACATAACCAAGCTGGTATTGCACACACTGGCGGCTTAATGCCATTACTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTCGCAGATAATGAGGATAATGTGCCAGATTTTATCAGGGTAGGTGGAATTCAGAGACTACAGGATGGAGAGTTTATTGTTCAAGCAACTAAGGATTGTGTTGCTAAGACATTGAAAAGACTAGAAGAGAAGATTCATGGCCGTGTGCTGAACCATTTGCTGTATCTTATGAGAGTTTCAGATAAGGCGTTCCAAAGGCGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGCAGATGACCAGAGAAAAGTATTTGTTGACCACAATGGGTTGGAATTGCTTATTGGGCTTCTTTGCTCATCCAGCCCTAAGCAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCCAACAAAGCTACTGCTGTGTCTCCCGTAGATGCTGCTCCTCCATCTCCAACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACATTGTCCGACGTTACATTTTTGGTTGAAGGTAAACGGTTTTATGCTCACAGGATCTGTCTACTGGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGCGGTTATAGGGAGAAGGATGCAAGGGACATTGAGATTCCAAATATTAGATGGGAGGTCTTTGAGCTGATGATGAGATTTATATATACTGGATCAGTTGATATCACTCTTGATATTGCTCAAGATCTCCTCCGAGCAGCTGATCAATATCTCTTAGAAGGGCTTAAGAGATTATGTGAATACACGATTGCACAGGATGTATCGCTGGAGAACGTGTCAAGTATGTATGAACTTTCGGAAGCCTTCAATGCTATATCATTGAGACACACATGCATCCTTTTTATCTTGGAGCACTTTGAAAAACTAAGTGCAAGGCCAGGACACTCTCATTTGATTCTGCTTATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTTCAAAGGGGAGCTCCAGCATCCAAGCGTAG 1827 0.4357 MHLQPPPLLENDPVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVNLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECDALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVILAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDAHNQAGIAHTGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVPDFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSDKAFQRRVALALAHLCSADDQRKVFVDHNGLELLIGLLCSSSPKQQLDGAVALCKLANKATAVSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDVSLENVSSMYELSEAFNAISLRHTCILFILEHFEKLSARPGHSHLILLIIPEIRNYFVKALSKGSSSIQA 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00059 608 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 266 308 IPR000225 GO:0005515
Car08g00059 608 ProSiteProfiles BTB domain profile. 442 509 IPR000210 GO:0005515
Car08g00059 608 SUPERFAMILY ARM repeat 73 410 IPR016024 -
Car08g00059 608 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 99 134 IPR000225 GO:0005515
Car08g00059 608 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 2 603 - -
Car08g00059 608 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 2 603 IPR044282 -
Car08g00059 608 SUPERFAMILY POZ domain 434 536 IPR011333 -
Car08g00059 608 Gene3D - 6 196 IPR011989 -
Car08g00059 608 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 225 267 IPR000225 GO:0005515
Car08g00059 608 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 49 99 IPR000225 GO:0005515
Car08g00059 608 CDD BTB_POZ_ARIA_plant 429 544 - -
Car08g00059 608 Pfam Armadillo/beta-catenin-like repeat 95 127 IPR000225 GO:0005515
Car08g00059 608 Pfam Armadillo/beta-catenin-like repeat 214 253 IPR000225 GO:0005515
Car08g00059 608 Pfam Armadillo/beta-catenin-like repeat 130 169 IPR000225 GO:0005515
Car08g00059 608 SMART BTB_4 442 539 IPR000210 GO:0005515
Car08g00059 608 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 141 183 IPR000225 GO:0005515
Car08g00059 608 SMART arm_5 88 128 IPR000225 GO:0005515
Car08g00059 608 SMART arm_5 214 254 IPR000225 GO:0005515
Car08g00059 608 SMART arm_5 130 170 IPR000225 GO:0005515
Car08g00059 608 SMART arm_5 370 410 IPR000225 GO:0005515
Car08g00059 608 SMART arm_5 255 295 IPR000225 GO:0005515
Car08g00059 608 SMART arm_5 172 212 IPR000225 GO:0005515
Car08g00059 608 SMART arm_5 38 86 IPR000225 GO:0005515
Car08g00059 608 Gene3D Potassium Channel Kv1.1; Chain A 422 571 IPR011333 -
Car08g00059 608 Pfam BTB/POZ domain 435 537 IPR000210 GO:0005515
Car08g00059 608 Gene3D - 197 420 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00059 Car-Chr8 529342 536023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00059 88 309 U-box Gene Family AT5G67340 27.803 3.71e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Car08g00059 BTB 2.9e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00059 - - gmx:100812456 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00059 08 529342 536023 Car04g01341 04 13772957 13783537 PCT