Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00055 atggagcaAGCACTAATTGGTGCACTGAATCTTGTATCTCGAAATCTCCCTCTTCCTCCAGAACTCTTCAACACCGTTTCTTCTATCTGTTACGGATCTGACACCAACTCCGATGCGCCCTCCAATTCTACACAACACCATGATTTATTCACAGACCTTCAAGATGCACTTTCCATTCAACGTCCTCATTATTCTTCCAGTTCCAAATTAAACAATGCTATCAAAACCCGTTTTCTAACTCGCTTTCACCACCGCTTAACTCAGCTTCAAGGATTGCCTTCGAGCTGGGGAGACGACCTACAGACGAGGTGCTTGCTCGAGCTTTACGGATTAAAGCTAGCCGAGTTGCAGGGGAAAGTTCGGACGGAAGTGAGTTCTGAATATTGGCTTAATGTTAAATGTGCATATCCCGACAAGCAGTTGTTTGACTGGGGCATGATGCGGTTGCGGCGTCCTCCTTATGGTGTTGGAGATCCATTTGCCATAAATGCTGATGATCAAATAAGAAAGAAACGGGATGCTGAGAGACTATCAAGATTAGAAGAGCAAGAAAAAACTCACATAGAAACCACAAAAAGAAGATTTTTCGCAGAAATACTGAATGCTGTCCGTGAGTTCCAGTTACAAATCCAAGGTTCTTTGAAGAGGAGAAAACAGAGGAACGATGCTGTTCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACACGGGCCGAGAAATTGAGATTCCAAGCTTTAAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTGCTTGTAAATTTGGGAGCAGCCGTTCAACGTCAAAGAGACTCCAAACAATCAAATGGTATTGAACCCTTGGAAGATTTAAAAGCTGATTTACCACAGTCAGATGTTTTAAAGAATGGGTTTTCTAAGGAATCACCTCTTGAGGAAGATGTGGATTTGATAGATTCTGATCATAATGATGACACTAGTGATTTACTTGAAGGTCAGAGGCAATACAATTCTGCTATACATTCCATTCAAGAAAAGGTAACTGAACAACCATCTACCCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACCATTTCGTTGATAGCATATCTTATGGAATACAAGAGTGTGACTGGCCCTTTTTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCGCAACATGGGCTCCTAGCATTACAGCTGTTCTATATGATGGACGGCTGGATGAGAGGAAAGCAATAAAGGAAGAACTGTCAGGGGAGGGGAAATTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATCTATTGGAAATACTTGATTGTTGATGAAGGGCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACTCTGGACTCCAGCTATCAGATTGAACGGAGACTACTGTTGACTGGAACCCCAATTCAGAACAGCCTGCAGGAATTGTGGTCTCTGCTCAACTTTCTCCTTCCAAACATTTTCAATTCAGTTCAGAATTTTGAGGACTGGTTTAATGCTCCCTTCGCAGACCGAGTTGATGTGTCCTTAACAGATGAAGAACAGTTATTGATTATTCGCCGTCTGCATCAAGTAATAAGGCCCTTCATACTAAGAAGGAAAAAGGCTGAGGTGGAAAAGTTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTAACTGATGTCGGCAGAGTTGGGTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGGAAGTGTTGTAACCATCCCTACCTGTTTGTGGGAGACTATGATATATATAATCGTAAGCAGGAGATTGTCAGAGCATCAGGGAAATTTGAACTTCTTGACCGTTTGCTTCCAAAACTTCGTAGAGCTGGTCACAGAGTCCTCCTTTTTTCACAAATGACTCGTCTCATGGACATTCTTGAAATTTATCTTCGACTTCACGATTACAAATTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTACTACGGAAATTCAATGCTCCTGACTCTCCATACTTTATGTTTCTTTTGAGCACTCGTGCCGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTAATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGACAAAAAAAGGAAGTTAGAGTTTTTGTGTTAGTTAGCGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATTCAGGCGGGACTTTTCAACACAACTTCAACAGCCCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTAGTAGCTCACTCGGAACAGATGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGGTCCGATGAGGAATATTGGCTGTTTGAGAGAATGGACGAGGATAGAAGGCAAAAGGAGAATTACAGATCTCGTCTCATGGAAGAGCATGAACTACCAGATTGGGTATACTCTGCACTAAATAAGGATGATAAGGTGAAGGCTTTTGACAGCAGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACGTTAAGCGATCTACAATGGATGAAGGCAGTGGAAAACGGACAGGATATAAATAAGCTTTCGGCTAAAGGGAAACGAAGAAACCACCTCCCTGTTGACAGCCATGCACAAACTAGTGATGATACCGGGGCAGAAGAGATGTTTTTAGAGTTGAGCAATGCAGTGACAAATGAGAGATCAAGTGAAGATACTTTTGATGTGACCCCTGCCTCTAAGAGACTCAGGCATGAAGAAATAAGTCTCCGGAAACATGAAACCGAAGATGTCGGCGTAAGTGGTTTGAACGAGCATGTGTTTTCGTGGAATACACACAGAAAGAAGAGATCAAGCTATCTTAGCCAGGGTTCATTATCTGATACCAGAGGGCAGAGTGCAAATGGAAGAGCAAGCTAG 3213 0.4177 MEQALIGALNLVSRNLPLPPELFNTVSSICYGSDTNSDAPSNSTQHHDLFTDLQDALSIQRPHYSSSSKLNNAIKTRFLTRFHHRLTQLQGLPSSWGDDLQTRCLLELYGLKLAELQGKVRTEVSSEYWLNVKCAYPDKQLFDWGMMRLRRPPYGVGDPFAINADDQIRKKRDAERLSRLEEQEKTHIETTKRRFFAEILNAVREFQLQIQGSLKRRKQRNDAVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSKQSNGIEPLEDLKADLPQSDVLKNGFSKESPLEEDVDLIDSDHNDDTSDLLEGQRQYNSAIHSIQEKVTEQPSTLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEYKSVTGPFLIVAPKAVLPNWINEFATWAPSITAVLYDGRLDERKAIKEELSGEGKFNVLITHYDLIMRDKAFLKKIYWKYLIVDEGHRLKNHECALARTLDSSYQIERRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDIYNRKQEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDYKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEYWLFERMDEDRRQKENYRSRLMEEHELPDWVYSALNKDDKVKAFDSSSVTGKRKRKEVVYADTLSDLQWMKAVENGQDINKLSAKGKRRNHLPVDSHAQTSDDTGAEEMFLELSNAVTNERSSEDTFDVTPASKRLRHEEISLRKHETEDVGVSGLNEHVFSWNTHRKKRSSYLSQGSLSDTRGQSANGRAS 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00055 1070 Pfam SNF2-related domain 373 661 IPR000330 GO:0005524|GO:0140658
Car08g00055 1070 Pfam Helicase conserved C-terminal domain 681 794 IPR001650 -
Car08g00055 1070 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 684 851 IPR001650 -
Car08g00055 1070 SMART helicmild6 710 794 IPR001650 -
Car08g00055 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 595 IPR027417 -
Car08g00055 1070 SMART SnAC_2 887 948 IPR029295 GO:0042393
Car08g00055 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 849 IPR027417 -
Car08g00055 1070 Pfam Snf2-ATP coupling, chromatin remodelling complex 883 948 IPR029295 GO:0042393
Car08g00055 1070 SMART ultradead3 366 559 IPR014001 -
Car08g00055 1070 MobiDBLite consensus disorder prediction 1045 1070 - -
Car08g00055 1070 PANTHER ATP-DEPENDENT HELICASE BRM 4 1013 - -
Car08g00055 1070 Gene3D - 339 594 IPR038718 -
Car08g00055 1070 Gene3D - 601 901 IPR027417 -
Car08g00055 1070 PANTHER SNF2/RAD54 HELICASE FAMILY 4 1013 - -
Car08g00055 1070 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 382 548 IPR014001 -
Car08g00055 1070 MobiDBLite consensus disorder prediction 1044 1070 - -
Car08g00055 1070 CDD SF2_C_SNF 672 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00055 Car-Chr8 500862 508418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00055 677 822 RAD5 or RAD16-like Gene Family AT5G43530 37.333 2.73e-21 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car08g00055 SNF2_N 4.8e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00055 - - gmx:100775993 1824.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00055 08 500862 508418 Car08g00055 08 500862 508418 ECH