Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00054 atgagTACGATGCTACAAACCATTGTGACAGTGcttcttctccttatgcttcttctcatcatcatcttccttttctttctcttcAAACCATGGCGCTTCTTTTTCTCTTCTCGCTTTCGCTCTTCTACCATCAAGGGTTCTGTTGGTGAGTTAGATAGACCTCTCGTTGAAGACGATGTAaataatcagaataataatattcataataataaCGAATTGCCTAGAGATTATGATCTTGAAGGTGCGTGTTATCCTAATGAAGTTAATTTTCGTTCTCCTCGAACACATGGACAAGGACTTGTTCATAAACAAAGGCTTCAGAACCTTTCTGTTTCACCTAATTTCCCTCAAGGTGGTGATAGTTTGGTTTTAGATGTTATCCCTGATCATTCTGAAGATGTTGATGTTGTTCAACCATTTAAGTTTCCACCTCCTCCTATATTAGCTCAAATTCAAAAGCAAAGTACACAGAATCATCAAAATGATAGATTGCAAGACTTTGTGGAAAGAGATATTACTGATCAAAGAAGTTGCCTCACTCTGGAGGTTATAAGTGGTCCTTCTTGCGGACTACGATGTTCTGTACAGTCCACTAATCCCTCTCGTCTACCGCTGACGTTGGGAAGGGTTTCTCCTAGTGATTTGTTGATAAAGGATTCGGAAGTTTCGGGAAAGCATGCTTTGATAAAGTGGAATTTGGATAAGATGAAATGGGAGTTGGTGGATATGGGTAGCCTGAATGGAACACTTTTGAATTCTAAGTCAATCAACCATCCAGACACTGGAAGTAGGCATTGGGGAGATCCAATGAATCTTGCTAATGGAGATGTTATAACACTTGGAACAACGTCGAAAATAATTGTTCATATTGCTTCGCAAAATCATCATCACATTCCCTTTGGAGTCGGTATGGCATCAGATCCCATGGCTTTACGTCGAGGAGGAAAAAAACTTCCTATGGAGGATGTGTGCTATTATCAATGGCCTCTACCTGGGCTGGATCAGTTTGGACTTTTTGGCATTTGTGATGGGCATGGTGGTGACGGGGCTGCCAAATCTGCTAGCAAACTTTTTCCTGAGATAGTTGCTAGTATATTATCGGATTCATTAAAGAGGGAGAGGGTTTTGTCACTTCGTGATGCTTCAGATATTCTCCGAGATGCATTTTCTCAAACAGAAGCACGCTTGAATCACTATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGGCTGATTGTGATGATAATTTCTATGCACAATGTGCAAATGTTGGAGATTCTGCCTGCATTATGAGTGTTAATGGGCAACAAATGAAGATGACAGAAGATCACAAGATAACAAATTATTCTGAAAGACTCAGAATTGAAGAGACAGGTGAACCATTGAAAGACGGGGAAACACGACTATATGGTATAAATCTTGCAAGGATGCTTGGGGACAAATTCCTAAAACAGCAGGATTCCCGGTTCAGTTCAGAACCTTATATAAGCGAGGCCGTCCATATTCACCAAGCAAGCAAGGCTTTTGCTGTTCTAGCTAGTGATGGGTTATGGGACGTTGTCAGCTCGAAGAAGGCAGTTCAGCTAGTGCTTCAGATGAGGGAGAGATACTATACAGAGAAAGAGATTACAGCAGAAAAGACTGCTAGTTTGTTGTTGAGTGAGGCTAGAACACTCAAAACGAAGGATAATACCTCCATAATATTCTTAGATTTTGATACCTTCAATAGTTTCTCTTGTAAAGTTGAATCCTAG 1758 0.3908 MSTMLQTIVTVLLLLMLLLIIIFLFFLFKPWRFFFSSRFRSSTIKGSVGELDRPLVEDDVNNQNNNIHNNNELPRDYDLEGACYPNEVNFRSPRTHGQGLVHKQRLQNLSVSPNFPQGGDSLVLDVIPDHSEDVDVVQPFKFPPPPILAQIQKQSTQNHQNDRLQDFVERDITDQRSCLTLEVISGPSCGLRCSVQSTNPSRLPLTLGRVSPSDLLIKDSEVSGKHALIKWNLDKMKWELVDMGSLNGTLLNSKSINHPDTGSRHWGDPMNLANGDVITLGTTSKIIVHIASQNHHHIPFGVGMASDPMALRRGGKKLPMEDVCYYQWPLPGLDQFGLFGICDGHGGDGAAKSASKLFPEIVASILSDSLKRERVLSLRDASDILRDAFSQTEARLNHYYEGCTATVLLVWADCDDNFYAQCANVGDSACIMSVNGQQMKMTEDHKITNYSERLRIEETGEPLKDGETRLYGINLARMLGDKFLKQQDSRFSSEPYISEAVHIHQASKAFAVLASDGLWDVVSSKKAVQLVLQMRERYYTEKEITAEKTASLLLSEARTLKTKDNTSIIFLDFDTFNSFSCKVES 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00054 585 CDD FHA 179 284 IPR000253 GO:0005515
Car08g00054 585 ProSiteProfiles PPM-type phosphatase domain profile. 301 573 IPR001932 -
Car08g00054 585 Pfam FHA domain 206 281 IPR000253 GO:0005515
Car08g00054 585 ProSitePatterns PPM-type phosphatase domain signature. 338 346 IPR000222 GO:0043169
Car08g00054 585 PANTHER PROTEIN PHOSPHATASE 2C 70 37 584 - -
Car08g00054 585 SUPERFAMILY SMAD/FHA domain 177 288 IPR008984 GO:0005515
Car08g00054 585 SMART FHA_2 204 256 IPR000253 GO:0005515
Car08g00054 585 Pfam Protein phosphatase 2C 312 566 IPR001932 -
Car08g00054 585 Gene3D - 173 308 - -
Car08g00054 585 Gene3D - 309 580 IPR036457 -
Car08g00054 585 CDD PP2Cc 313 573 IPR001932 -
Car08g00054 585 ProSiteProfiles Forkhead-associated (FHA) domain profile. 205 256 IPR000253 GO:0005515
Car08g00054 585 PANTHER PROTEIN PHOSPHATASE 2C 37 584 IPR015655 GO:0004722|GO:0006470
Car08g00054 585 SUPERFAMILY PP2C-like 314 574 IPR036457 -
Car08g00054 585 SMART PP2C_4 295 571 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00054 Car-Chr8 494387 499496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00054 1 575 PP2C-type Phosphatase Gene Family AT5G19280 58.027 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00054 K01090 - gmx:100170642 887.1