Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00049 ATGTATGGTTCTCAGAATCACAAACGGATGCTTGAAATGTTTGAGAAAGAATTAGGAAGAGATAGAGACGATGGATTCGAGATCGAACCAGATGTTCCTTCAGGtgatgataatgataatgataatgatgaACAACAATCTAACCAACCACCCAAAAAAAGGAGCTACCGCCGCCATACGCAGCATCAAATACAAGAAATGGAAGTGTTCTTCAAACATTGTCCCCACCCTGATGACAAGCAAAGAAAAGAGTTGGGACTTCAGCTTGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTTCAAAACAAGCGCACTCAGTTGAAGGTTCAAAGTGAAAGAGAAGAGAATGAATTCTTGAAAGCAGAGATAGAAAAGCTTCGCAGTGAGATGAATAGGTATAAGGAGGCCATAAGTAATACAACATGTCATCTGTGTGGAACCCCAGCTACCGTTGGTGAAATGTCGTATGAGGAGCAACAATTGAGGTTGGAGAATGCTTTATTAAGAAAAGAGATAGAAAGGTTGGCGGAGGATGCAACGGAATCTCATACCAACATTTCGTCAACACAAACTAGCAATCAATTAGTGGTTTCACGGTCGGTGGATGTTGGTAATGGTAAGTATAATATTAATAATGGGATGGTAGGAGAAGCATATGGTGGTAATGGTGAGCTTGTTAGGTCAATACAACTTCAAGGTGTTGAAGATAAAAGGAAGATTGTTGAGCTTGCTGTTTTAGGAATGGATGAACTGACTAAATTAGCTTTGGCTAATGGAAACAATTTATGGCTCCCAAACAACAACCTCAATACTGAGATTCTAAATGAAGATGAATACGTGAGGCATTTCCCTCGAGCTACAGCTCCTAAACCATTGGGTTTAAGAACTGATGGTTCTAGAGAATCCGTTGTGGTTATCATGAATCATATTAATCTCATTGATATTCTTATGGATGTGAATCGATGGTCGAGTATGTTTAGCGGTGTTGTTTCAAGAGCTGTGACACTCAAAGTGCTTTCAACTGGAGTGGCGGGAAATTACAATGGAGCCTTGCAAGTGATGTCAGCTGAGTTTCAGGTGCCATCACCATTTGTTCCAAGTCGTGAAAACTATTTTGTGAGGTACTGTAAACTTCATGTAGATGGGGTATGGGCAGTGGTTGATGTGTCATTGGATAGTCTTCGACCTGCAGCTAGTGGGAGTAGCACTGCCTCTAGAACCCAAAGAAGACCTTCTGGTTGTTTCATTCAAGAACTGCCTAATGGCTACTCTAAGGTTACATGGATTGAACATGTAGAAGTGGATGATAAGATGGTGCAAAATATATACAAACCACTAGTTGATTCAGGGCTTGCTTATGGAGCTAAACGCTGGGTAGCTATTTTACAGAGACAATGTGAACGTCTTGCTTGTTCTATGTCCAGCAACATGCCAACAGGGAACCTTGGTGTGATAATGAGTGTGGAGGGAAGGAAGAGTATGTTGAATCTTGCGGAAAGGATGGTAACTAGCTTTAGTACTAGTATTGGTGATTCAACAATACATGCTTGGACAAGTTTACCCTCCAATGGACCTGAGGATATAAGAGTCATGACAAAAAAATATAATGATGAACCAGGAAGTGGCAGACCCACCGGTGTTGTCCTTAGTACTGTCACTTCTTTCTGGCTTCCTGTTCCTCCTAAGAGGCTTTTTGATTTTCTTCGTAATCAAAACTCTAGAAGTCAGTGGGATATTCTCTCTAGTGGGGGTATAGTTCAAGAAATGGCACACATAGCAAATGGTCATGATCCTGGCAACTGTGTCTCTTTACTTCGTGTCAATAGTCCAAATATAGGGCAGAGTAATATGCTGATACTGCAAGAGAGTAGCACTGATATAACTGGATCATATGTAATATATGCACCTGTGGATATGGCTGCTATGAATGTAGTCTTGAATGGAGGTGACTCAAACTGTGTTGCTCTGCTTCCTTCTGGTTTTGCTATTGTTCCTGATGGTTCTGGACCAAATGGAGGACCAATACCTGATCTTCTATCTGGAGGTTCTCTTCTCACTGTTGCATTTCATATTTTGGTTGATTCTGTTACAAATGCAAGGCTTGCTCTTGGTTCAGTTACCACTGTTAACACTTTGATCAAGTCCACTGTCGAAAGGATTAAAGTTGCAGTCATACCTAACATCACCTGA 2190 0.4073 MYGSQNHKRMLEMFEKELGRDRDDGFEIEPDVPSGDDNDNDNDEQQSNQPPKKRSYRRHTQHQIQEMEVFFKHCPHPDDKQRKELGLQLGLEPLQVKFWFQNKRTQLKVQSEREENEFLKAEIEKLRSEMNRYKEAISNTTCHLCGTPATVGEMSYEEQQLRLENALLRKEIERLAEDATESHTNISSTQTSNQLVVSRSVDVGNGKYNINNGMVGEAYGGNGELVRSIQLQGVEDKRKIVELAVLGMDELTKLALANGNNLWLPNNNLNTEILNEDEYVRHFPRATAPKPLGLRTDGSRESVVVIMNHINLIDILMDVNRWSSMFSGVVSRAVTLKVLSTGVAGNYNGALQVMSAEFQVPSPFVPSRENYFVRYCKLHVDGVWAVVDVSLDSLRPAASGSSTASRTQRRPSGCFIQELPNGYSKVTWIEHVEVDDKMVQNIYKPLVDSGLAYGAKRWVAILQRQCERLACSMSSNMPTGNLGVIMSVEGRKSMLNLAERMVTSFSTSIGDSTIHAWTSLPSNGPEDIRVMTKKYNDEPGSGRPTGVVLSTVTSFWLPVPPKRLFDFLRNQNSRSQWDILSSGGIVQEMAHIANGHDPGNCVSLLRVNSPNIGQSNMLILQESSTDITGSYVIYAPVDMAAMNVVLNGGDSNCVALLPSGFAIVPDGSGPNGGPIPDLLSGGSLLTVAFHILVDSVTNARLALGSVTTVNTLIKSTVERIKVAVIPNIT 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00049 729 CDD START_ArGLABRA2_like 237 467 - -
Car08g00049 729 SUPERFAMILY Bet v1-like 490 694 - -
Car08g00049 729 SMART HOX_1 52 114 IPR001356 GO:0003677
Car08g00049 729 Coils Coil 158 178 - -
Car08g00049 729 Pfam START domain 251 468 IPR002913 GO:0008289
Car08g00049 729 ProSiteProfiles START domain profile. 233 471 IPR002913 GO:0008289
Car08g00049 729 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Car08g00049 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 726 IPR042160 -
Car08g00049 729 SMART START_1 242 468 IPR002913 GO:0008289
Car08g00049 729 MobiDBLite consensus disorder prediction 1 60 - -
Car08g00049 729 Gene3D - 307 468 IPR023393 -
Car08g00049 729 SUPERFAMILY Homeodomain-like 37 109 IPR009057 -
Car08g00049 729 Coils Coil 102 143 - -
Car08g00049 729 SUPERFAMILY Bet v1-like 235 469 - -
Car08g00049 729 MobiDBLite consensus disorder prediction 9 29 - -
Car08g00049 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 16 726 - -
Car08g00049 729 Pfam Homeodomain 53 108 IPR001356 GO:0003677
Car08g00049 729 Gene3D - 38 123 - -
Car08g00049 729 CDD homeodomain 53 111 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00049 Car-Chr8 433018 437412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00049 22 724 Homeobox Transcription Factor Family AT4G04890 64.525 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car08g00049 START 1.1e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00049 K09338 - tcc:18597106 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00049 08 433018 437412 Car04g01356 04 13874916 13879685 PCT