Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00045 ATGGTTATACTTATTAATAGGAACAATTCCATGGCTTCTTTGAAGCTCGTGTTTCTATTTATGCTCACTATTAGTTTCACATACTTTGTTGCTAACACTCAAGCACAAGCACAAGCACAGGACATTCCTGTATATCTCTACAAAAACTGTTCAATCAACGCCACCACCGCCACCAACAGTCCCTTCCAAATTGACCTCAAAACCCTCCTTCATTCCCTCTCTTCAAACGCCACCGGAACCACCCAATTCCACAACACCACCGTCACAGGTAAATCCCCCGATGACACAGTCTACGGACTTTTCTTATGCAGAGGTGACGTCACACCAACTCTCTGTCGACAGTGCGTTGTGAACGCAACACAAAGACTGTTATCAGAGTGTTCACATTCCAAACAGGCGGTCATATGGTACGACGAGTGTACGGTACGCTACTCTAATCGTTCATTTTTTTCAACGGTGGATACGAGGCCACGTGTTGGTCTTCTCAACACAGGAAATGTTTCAAACCAAGATAGTTTCATGCGTTTGTTATTTCTGACTATAAACAAAACCGCTGATGAAGCTTCGAATTCTCCAATTGGTTCTAAGAAATATGCGACGAGGCAAGCTACTATTTCTGGATTTCAGAATCTTTACTGTTTGGCTCAGTGTACGAATGATCTGTCACCACAAGACTGTAGAAGGTGTTTGAGTGCTGTTATTGGAGACCTTCCATGGTGTTGTACTGGAAAGCAAGGTGGAAGAGTTCTTTATCCAAGTTGTAATGTTAGGTATGAATTGTATCCTTTCTATCGCACCAACAATGTTTCTTCTCCATCCCCTTCACCGTCAATTCTTCTTCCTCCCACAACTAATTCCACAGGAGGAAGTAGTGGGATCTCAGGTGGGACAATTGTTGCAATTGTGGTTCCAATCATAGTTGCTGTGATTCTATTTATAGTGGCAATTTGTTTCTTGAGTAAAAGGGCAAGGAAGAACCGTGATTCTCTACAAGAAGGAAAGACAGCATATGATATCACTAATGTGGAGTCCTTACAATTCGATTTCGCCACCATTGAAGCAGCCACCAACAAATTCTCTGCTGATAACAAGTTGGGTGAAGGTGGATTTGGTGAGGTTTATAAGGGGACTCTTACAAGTGGACAAGAAatagctgtgaagagactctccaaaagctcagggcaaggtggagaagaattcaagaatgaagtggtggtagttgccaagcttcaacacagaaacttggcgaggcttcttggattttgcttgcaaggagaggaaaagatacttgtttatgaatatgtacccaaTAAAAGTCTGGATTATATTCTTTTTGATCCTGAAAAGCAAAGGGAACTAGATTGGGGTAGACGTAACAAAGTCATTAAAGGGATTGCTCGAGGAATGCAATATCTTCACGAAGATTCTAGGCTTAGAATTATACATCGTGATCTTAAAGCTAGCAACATATTGTTGGATGGAGATATGAATCCGAAAATATCAGATTTCGGTATGGCAAGAATAGTCGGAGTTGATCAAACTCAAGGGAACACCAGCAGAATTGTAGGGACTTACGGCTACATGGCTCCGGAGTATGCAATGCACGGAGAGTTCTCTGTAAAGTCTGATGTATACAGTTTTGGAGTTCTCATTATGGAGATTATAACCGGCAAGAAGAATAGTTCCTTCTATGACTCTGATGGTGCCGATGATCTATTGAGCTATACATGGAAAATGTGGAAAGAAGGAGCACCCTTGGAAATGGTGGACCCGACATTAAGAGAATCACATAATCCAAATGAAGTTATGAGAAGCATTCATATTGGTTTACTTTGTGTTCAAGAAGATCCAGCTGAGAGACCTACAATGGCATCAATAGTTCTTATGCTAGACAGTAACACGGTTACTCTACCAAATCCAAAGCAGCCTGCATCTTTTCTTCACAGTGCAACTGATCCAAACATGCCAAGGGACCTGCGATTTGATTCTTCGACAACAAAGTCAATAACAACTTCTGTGAATGAGATGTCAATTAGTGAAATGGATCCACGATAA 2055 0.382 MVILINRNNSMASLKLVFLFMLTISFTYFVANTQAQAQAQDIPVYLYKNCSINATTATNSPFQIDLKTLLHSLSSNATGTTQFHNTTVTGKSPDDTVYGLFLCRGDVTPTLCRQCVVNATQRLLSECSHSKQAVIWYDECTVRYSNRSFFSTVDTRPRVGLLNTGNVSNQDSFMRLLFLTINKTADEASNSPIGSKKYATRQATISGFQNLYCLAQCTNDLSPQDCRRCLSAVIGDLPWCCTGKQGGRVLYPSCNVRYELYPFYRTNNVSSPSPSPSILLPPTTNSTGGSSGISGGTIVAIVVPIIVAVILFIVAICFLSKRARKNRDSLQEGKTAYDITNVESLQFDFATIEAATNKFSADNKLGEGGFGEVYKGTLTSGQEIAVKRLSKSSGQGGEEFKNEVVVVAKLQHRNLARLLGFCLQGEEKILVYEYVPNKSLDYILFDPEKQRELDWGRRNKVIKGIARGMQYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGMARIVGVDQTQGNTSRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLIMEIITGKKNSSFYDSDGADDLLSYTWKMWKEGAPLEMVDPTLRESHNPNEVMRSIHIGLLCVQEDPAERPTMASIVLMLDSNTVTLPNPKQPASFLHSATDPNMPRDLRFDSSTTKSITTSVNEMSISEMDPR 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00045 684 CDD STKc_IRAK 365 631 - -
Car08g00045 684 ProSiteProfiles Gnk2-homologous domain profile. 44 149 IPR002902 -
Car08g00045 684 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 682 - -
Car08g00045 684 Gene3D Transferase(Phosphotransferase) domain 1 435 641 - -
Car08g00045 684 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 682 - -
Car08g00045 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Car08g00045 684 Gene3D Phosphorylase Kinase; domain 1 320 434 - -
Car08g00045 684 Gene3D - 158 263 IPR038408 -
Car08g00045 684 Gene3D - 43 149 IPR038408 -
Car08g00045 684 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Car08g00045 684 Pfam Protein tyrosine and serine/threonine kinase 361 628 IPR001245 GO:0004672|GO:0006468
Car08g00045 684 ProSiteProfiles Protein kinase domain profile. 359 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00045 684 SMART serkin_6 359 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00045 684 SUPERFAMILY Protein kinase-like (PK-like) 344 653 IPR011009 -
Car08g00045 684 ProSiteProfiles Gnk2-homologous domain profile. 155 263 IPR002902 -
Car08g00045 684 Pfam Salt stress response/antifungal 166 261 IPR002902 -
Car08g00045 684 Pfam Salt stress response/antifungal 50 146 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00045 Car-Chr8 406547 410004 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00045 10 684 Receptor kinase-like Gene Family AT4G05200 53.623 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car08g00045 PK_Tyr_Ser-Thr 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00045 - - gmx:100305391 1002.66