LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car08g00044	ATGATTACTAGATCAAATCAGATCTGGTTAACCTCTCTATTTGTGTTTGATTTACTATATCTAATTTTAACAGCAGAATCAGCAGCAACATACATCGGTTCTAACTGCAACAACAACACCACATACACACCAAACAGCATATTATCTACAAATCTCAATGTCCTCCTCAATTCTCTCACAACAAACGCTTCCCAACAACAAGACGGTTACTATTTAACCATCATGGGTTTCGGAACAACTAACGCCGTTAACGGAATGTTTCTCTGTCGCGGCGACGTCAACACAACAACTTGTCAAAACTGCGTAACCGACGCCGTTAAACAAATCAAAAACCGTTGCCCTAACCAAACGGAAGCGATTATTTGGTACGAAGAGTGTCTCCTTCGTTACACGAATAAGTTTTTCAAATTCTATAGCATCGAACCGAGATTGAATCGTAAAGACGGTAATAATATTTCTGGCGTTGACTTTGACTTATTCAATGAAACGGTTTTTGGTTTGTTGAATGAGGTGGCGATTGAAGCGGCGCATTCAGTTACGGCGAAGAAATTTGCGACGGGAGAAATTGAAATTAGGAAGATTAGGAAGAAGGTGTATGGATCGGGGCAGTGTAGCACTGATTTGACGAGTGCTCAGTGTGAAACTTGTTTGAGAAACGCAATTGGAACTCTACGAGAGTGTTGTAGTGGTCAACAAGGTGCAAGTGCTCTTCTTGCTTCGTGTATTGTTAGATACGAACTTTATCAATTTTACACCATTTCTCGGACTCCATCATCTTCATCTTCTTCAGGAAAAAATGGACTTGGAAGAAAAACAATTGTCATCATTATTTTCGTGGCTTTTCTTCCGGTATTACTTTTATTTTTAGGCTGCTATTGCAAACGGAGAAGATCAAGGCAGAGACGTAGGACAATGCTAAAGGAAAATTTTGGCGATGAACTTAAAACACTAGAGTCATTGCAATTCAATTTGGCAACAATTGAAGCTGCCACAAACAAATTTTCACCGGAGAATGAGATAGGAAAAGGAGGATTTGGTGTTGTCTACAAGGGTGTTCTTTCCGATGGACAACAAATAGCAGTAAAGAAACTCTCAAGATTTTCAGGACAGGGTTCTATAGAATTTCAAAACGAAATTTTATTAATAGCGAAACTTCAACACAGAAATTTGGTGACTTTATTAGGATTCTGCTTGGAAGAACGAGAAAAAATACTTATATATGAATATGTACCTAACAAGAGTCTTGATTACTTTCTATTTCATCCCCATAAGCAAAAATTGTTACATTGGTTTGAGCGCTATAAAATTATAGGAGGAATTGCACGAGGAATTCTTTACTTACATGAATATTCAAGACTTAAAGTCATACACAGAGATCTCAAATCAAGCAATATATTATTAGATGACAATATGAATCCAAAAATATCAGATTTTGGTTTGGCAAGAATAGTTGCAATCGACCAACAACAAGGAAGTACTAACAGAATTGTAGGAACATATGGTTATATGTCTCCAGAATATGCAATGCATGGACAATTTTCTGAAAAGTCGGATGTTTTTAGTTTTGGAGTCATAATTCTTGAGATAGTTAGTGGAAAGAGGAATGTTCGTCCCATCGAATCACATGATTTTGATGACCTCTTAAAGACGGCTTGGAAACAATGGAGGAATAAAACCCCATTAGAATTGTTGGACCCCATTCTAAAAGAGTCATTTTCTCACAGTGAAGTTATTAAGTGCATTCAGCTTGGATTATTATGTGTTGCAGAAAATCCAGATGATAGACCTACAATGGCACAAGTTGTTTCATATCTCAGTACCCTTTTAGTTGAATTGCCACTTCCTCGAGAACCAGCATTTTCCTTGGATATGGGAATGAGAATAAACACAACAACAGAGTCGAGTTCGGGTCAATTAACTAGTAAATCTACAGGATCATCAATCAATGACATATCTAAGAGTCAATTTTTTCCTCGATGA	1980	0.3722	MITRSNQIWLTSLFVFDLLYLILTAESAATYIGSNCNNNTTYTPNSILSTNLNVLLNSLTTNASQQQDGYYLTIMGFGTTNAVNGMFLCRGDVNTTTCQNCVTDAVKQIKNRCPNQTEAIIWYEECLLRYTNKFFKFYSIEPRLNRKDGNNISGVDFDLFNETVFGLLNEVAIEAAHSVTAKKFATGEIEIRKIRKKVYGSGQCSTDLTSAQCETCLRNAIGTLRECCSGQQGASALLASCIVRYELYQFYTISRTPSSSSSSGKNGLGRKTIVIIIFVAFLPVLLLFLGCYCKRRRSRQRRRTMLKENFGDELKTLESLQFNLATIEAATNKFSPENEIGKGGFGVVYKGVLSDGQQIAVKKLSRFSGQGSIEFQNEILLIAKLQHRNLVTLLGFCLEEREKILIYEYVPNKSLDYFLFHPHKQKLLHWFERYKIIGGIARGILYLHEYSRLKVIHRDLKSSNILLDDNMNPKISDFGLARIVAIDQQQGSTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIILEIVSGKRNVRPIESHDFDDLLKTAWKQWRNKTPLELLDPILKESFSHSEVIKCIQLGLLCVAENPDDRPTMAQVVSYLSTLLVELPLPREPAFSLDMGMRINTTTESSSGQLTSKSTGSSINDISKSQFFPR	659

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car08g00044	659	ProSitePatterns	Protein kinases ATP-binding region signature.	340	363	IPR017441	GO:0005524
	Car08g00044	659	ProSiteProfiles	Gnk2-homologous domain profile.	140	250	IPR002902	-
	Car08g00044	659	Gene3D	Transferase(Phosphotransferase) domain 1	410	612	-	-
	Car08g00044	659	Pfam	Salt stress response/antifungal	159	248	IPR002902	-
	Car08g00044	659	Pfam	Salt stress response/antifungal	36	132	IPR002902	-
	Car08g00044	659	Pfam	Protein kinase domain	337	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car08g00044	659	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	455	467	IPR008271	GO:0004672\|GO:0006468
	Car08g00044	659	Gene3D	-	28	135	IPR038408	-
	Car08g00044	659	Gene3D	-	147	250	IPR038408	-
	Car08g00044	659	SUPERFAMILY	Protein kinase-like (PK-like)	320	631	IPR011009	-
	Car08g00044	659	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	15	659	-	-
	Car08g00044	659	MobiDBLite	consensus disorder prediction	631	659	-	-
	Car08g00044	659	ProSiteProfiles	Gnk2-homologous domain profile.	30	135	IPR002902	-
	Car08g00044	659	Gene3D	Phosphorylase Kinase; domain 1	293	409	-	-
	Car08g00044	659	CDD	STKc_IRAK	340	605	-	-
	Car08g00044	659	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	15	659	-	-
	Car08g00044	659	SMART	serkin_6	334	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car08g00044	659	ProSiteProfiles	Protein kinase domain profile.	334	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car08g00044	Car-Chr8	399955	403582	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car08g00044	12	659	Receptor kinase-like Gene Family	AT4G05200	43.219	0.0	543

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Car08g00044		Pkinase	4.9e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car08g00044	-		-	cam:101500396	1262.67