LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car08g00042	ATGGCTGCCCCAAAATACTACTTGTACTTTGTTGCATTCCTTTCCCTTTCTTTGTTGCTCAAAAAAGCTGAAGCAATCCCAACCTACACAGCTACACACTGCACAAACACAACCACTTATGCACCCAACACCACTTTCCAAAACAATCTCAATCTCCTCTTCTATTATCTCTCCAACAACATCTCCCAATCCAACGGTTACTTTTTCAGCATCGCCGGTTTCAGTACCTCCAACGCCGTCGGCGGAACCCTCCTCTGTCGCGGTGACGTCACCACCACCGTATGCGAACAGTGTCTCTCCACCGCACTTCAAGAAATAAGACGCCGCTGTCCCAATCAAAGAGAGGCTCTCATATGGTACGATGAGTGCTCTATGCGTTACACAAACAAGTACTTCGCCGTTGATAAGATCGTCCCTAGAGTCAACCTCGACGACGGAGTCAATGTCTCCGGCGTTGACTTGAGGCGCTTCAACCAATCGCTACATCGATTACTGATAGATTTGGTAACGAAAGCAGCGGGTTCCCAGTCGATGAAGTTTGCCGAcggtgaagttgcggtgacggagtcggtgacggtgtATGGTTTGGAACAGTGCACCAACGACTTAACGGACAATGAATGCGAGAGGTGTTTGAGAAATGCAATCGGAACTCTTCCATACGGAAAACAGGGCGCAAGAGCTTTGCTTCCGTCGTGTAATGTGAGATACCAACTATACCCTTTTTTCGCTTTATCTTCATCGCCTTCTTCAGGGGGGAGGAAGCTTGGACCCGGCATAGTTGCCGTCGTTGTCATCGTGCCCATTGTTTCTCTAATTATCTTATTTTTAGGCTGCTTCTATTTCAAGATAAGGTTGAAGAAGAATATACTAATGCCAACTTTGAGGGAAAATTTTGGGGATCAAATTCAAACTTTGGAGTCATTGCAATTCACTTTGGTTACTATTGAAGCTGCCACTAACCAGTTTTCATCGGAGAACAAGATAGGAAGCGGAGGATTTGGAGAAGTTTATAAGGGTGTTTTGCAAGATGGGCGACATATTGCCGTAAAAAAACTTTCAAAAGGTTCAGAACAAGGCACCATAGAATTTAAAAATGAGATCGTGCTAATAGCTAAACTTCAGCATAGAAATTTGGTAACTTTGTATGGATTTTGCTCGGAAGAACACGAAAAGATGCTTGTTTATGAATATGTACCTAACAAAAGTCTTGATTATTTCTTATTTGATCGTTATAAACAAAGAGTTTTGAATTGGCATGAAAGATATAAAATTATACGTGGAATTGCACGGGGGATTTACTATTTACATGATCAATCAAGACTTAAAATCATACATCGTGATCTCAAACCTAGTAATATATTGTTGGATGAGAAGATGAATCCAAAAATATCTGACTTTGGTATGGCAAAATTGATTGATATAGATCAACATCAAGGAAATACTAAGAGAATTGCCGGAACTTATGGTTATATGTCTACCGAATATGCAATGCATGGACATTTTTCTGAAAAGTCGGATGTATTTAGTTTTGGAGTCATAATTCTTGAGATAATCAGTGCAAAGCGGAATGCTCTTAGTTTTGATTCACCAGATTTTGATGACCTCTTAAGTTATGCTTGGAAAAATTGGAGAGACGAAAAACCGCTAGAAATATTGGACCCTGATATAGAAAAATCATTTTACTTTGCTGAAGTCATTAAATGCATTCAAATAGGTTTATTATGTGTACAACAAAATCCAGAAAATAGACCAACAATGGAAAGAATTGTTTCATATCTCAGTAGTGATTCGGTGGAACTACCATTGCCTCAAGAGCCTGCAGGAGTCATGGGTACTAGAATTATTCCAAGCATTATACCAAGAAGGACGATTTTGGATCAACATAAAAGTAGTAATACTACGGGATCCTCAAAAAATGATGTGACCATGAGTAATTATTTTCCTCGATAG	1953	0.3912	MAAPKYYLYFVAFLSLSLLLKKAEAIPTYTATHCTNTTTYAPNTTFQNNLNLLFYYLSNNISQSNGYFFSIAGFSTSNAVGGTLLCRGDVTTTVCEQCLSTALQEIRRRCPNQREALIWYDECSMRYTNKYFAVDKIVPRVNLDDGVNVSGVDLRRFNQSLHRLLIDLVTKAAGSQSMKFADGEVAVTESVTVYGLEQCTNDLTDNECERCLRNAIGTLPYGKQGARALLPSCNVRYQLYPFFALSSSPSSGGRKLGPGIVAVVVIVPIVSLIILFLGCFYFKIRLKKNILMPTLRENFGDQIQTLESLQFTLVTIEAATNQFSSENKIGSGGFGEVYKGVLQDGRHIAVKKLSKGSEQGTIEFKNEIVLIAKLQHRNLVTLYGFCSEEHEKMLVYEYVPNKSLDYFLFDRYKQRVLNWHERYKIIRGIARGIYYLHDQSRLKIIHRDLKPSNILLDEKMNPKISDFGMAKLIDIDQHQGNTKRIAGTYGYMSTEYAMHGHFSEKSDVFSFGVIILEIISAKRNALSFDSPDFDDLLSYAWKNWRDEKPLEILDPDIEKSFYFAEVIKCIQIGLLCVQQNPENRPTMERIVSYLSSDSVELPLPQEPAGVMGTRIIPSIIPRRTILDQHKSSNTTGSSKNDVTMSNYFPR	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car08g00042	650	Gene3D	Phosphorylase Kinase; domain 1	292	398	-	-
	Car08g00042	650	Pfam	Protein kinase domain	324	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car08g00042	650	Gene3D	-	27	132	IPR038408	-
	Car08g00042	650	Gene3D	-	148	242	IPR038408	-
	Car08g00042	650	ProSiteProfiles	Protein kinase domain profile.	323	594	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car08g00042	650	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	444	456	IPR008271	GO:0004672\|GO:0006468
	Car08g00042	650	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	12	627	-	-
	Car08g00042	650	ProSiteProfiles	Gnk2-homologous domain profile.	137	242	IPR002902	-
	Car08g00042	650	SUPERFAMILY	Protein kinase-like (PK-like)	308	610	IPR011009	-
	Car08g00042	650	CDD	STKc_IRAK	329	594	-	-
	Car08g00042	650	SMART	serkin_6	323	594	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car08g00042	650	MobiDBLite	consensus disorder prediction	627	650	-	-
	Car08g00042	650	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	12	627	-	-
	Car08g00042	650	Pfam	Salt stress response/antifungal	155	239	IPR002902	-
	Car08g00042	650	Pfam	Salt stress response/antifungal	34	129	IPR002902	-
	Car08g00042	650	ProSitePatterns	Protein kinases ATP-binding region signature.	329	352	IPR017441	GO:0005524
	Car08g00042	650	Gene3D	Transferase(Phosphotransferase) domain 1	399	601	-	-
	Car08g00042	650	ProSiteProfiles	Gnk2-homologous domain profile.	28	132	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car08g00042	Car-Chr8	390528	394667	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car08g00042	16	650	Receptor kinase-like Gene Family	AT4G05200	45.551	0.0	560

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Car08g00042		Pkinase	6.8e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car08g00042	-		-	cam:101500396	1207.59