Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00029 ATGGAGCCAGCTGAGCTGATTTCTGAAGAATGGAGTTCTCTTAGTGGACTCTACACTGCTGAGGAGGCTGACTTTATGAACCACTTTCTTGGACTTGCTAATGCTAATGCTAATGCTAACTCCTCACTCCCACAACAACACCTCTATCAAAATTCCAATGAATCCACAATACTTAGTGTCACAAAAAACAATTCTAACTTTGCTGCACAAGTACCTAACTCAAGTAATATCTTCTTCCCCACAACAACTGATCCAGTAAACAACTTTGGCTATATTTCTATGGGGATTTCCATAGGTGATGATTGCAAATTCAGTCCATATATAACACAAGGGAATGAAAGCAAACATACAAATGATAACACTGATGAAAATATTATAGCTGACAAGGATTTGCAGGTCCCAAAGGAATGTGAAATCAGAAGGGCAGGAAAAAGATCTAGAAGCTCGAATGAGGTACCAAAGAACAAGAGGAATGTTAAATCAAGGAAAAATATAAGATGCGCTTCGTTATGCAGCGAAGAGAATACAAGCCCTGTTTCTCAGGATCAGACCTTAAGCAGTTGTGCCTCAGAGGATGATATGAATTCTTCTCATGAGCTGCGTCGAGAGGCATCTTCAAGTTTGAGTCAGGACGATTCTACAGCTCTGAAGTTAAGTGGAAAATCAATATCTAGTAGAGGTACCGCTACGGATCCACAGAGCCTCTATGCAAGAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAAAACCTTGTCCCCAATGGAACTAAGGTGGATATCAGCACTATGCTTGAGGAAGCCGTCCAATATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTAAGCTCTGATGATTTGTGGATGTATGCTCCCATTGCTTACAATGGAATGAACATTGGACTGGAACTTGGTATTACCCCAACAAAAGATACAAAGGATATGCGATGA 957 0.3981 MEPAELISEEWSSLSGLYTAEEADFMNHFLGLANANANANSSLPQQHLYQNSNESTILSVTKNNSNFAAQVPNSSNIFFPTTTDPVNNFGYISMGISIGDDCKFSPYITQGNESKHTNDNTDENIIADKDLQVPKECEIRRAGKRSRSSNEVPKNKRNVKSRKNIRCASLCSEENTSPVSQDQTLSSCASEDDMNSSHELRREASSSLSQDDSTALKLSGKSISSRGTATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLELGITPTKDTKDMR 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00029 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 310 - -
Car08g00029 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 228 277 IPR011598 GO:0046983
Car08g00029 318 Gene3D - 230 286 IPR036638 GO:0046983
Car08g00029 318 MobiDBLite consensus disorder prediction 113 160 - -
Car08g00029 318 SMART finulus 234 283 IPR011598 GO:0046983
Car08g00029 318 MobiDBLite consensus disorder prediction 176 193 - -
Car08g00029 318 MobiDBLite consensus disorder prediction 176 235 - -
Car08g00029 318 MobiDBLite consensus disorder prediction 116 158 - -
Car08g00029 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 294 IPR036638 GO:0046983
Car08g00029 318 Pfam Helix-loop-helix DNA-binding domain 238 278 IPR011598 GO:0046983
Car08g00029 318 CDD bHLH_AtIND_like 229 291 - -
Car08g00029 318 PANTHER TRANSCRIPTION FACTOR BHLH54 35 310 - -
Car08g00029 318 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00029 Car-Chr8 277547 278839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00029 10 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 40.988 1.74e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car08g00029 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00029 - - mtr:MTR_5g005110 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00029 08 277547 278839 Car08g00029 08 277547 278839 ECH
Car08g00029 08 277547 278839 Car04g01419 04 14446589 14448403 PCT