Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00028 ATGGCTGCAACAACCGTGGTTGCCGGACGAGAGTTGTCGAACCCTCCTTCTGACGGAATCTCCAACATTCGTTTCTCTAATCATAGTGATCATCTTCTCGTTTCCTCTTGGGACAAGAGCGTGCGTCTCTACGATGCAAGCGCAAATGTGCTCAGAGGAGAATTCATGCACGGCGGACCCGTACTTGATTGTTGCTTCCACGATGACTCTTCCGGCTTCAGTGCCGGCGCTGATAATACTGTCAGACGCCTCCTTTTCAGCACCAACAAGGAGGATATTTTGGGAAAGCATGATGCACCTGTTCGTTGTATAGAGTACTCTTATGCAGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTAAAATGTTGGGATCCTAGAGGTGCAAGCGGACAAGAGCGCACTCTTGTTGGGACATATCAACAACCTGAGCGAGTTTACTCTCTATCACTTGTTGGACATCGGCTTGTTGTAGCAACGGCTGGAAGACATGTTAATGTTTATGACTTGAGGAACATGTCTATTCCTGAACAAAGAAGGGAATCTTCATTGAAATATCAAACCAGATGTGTGCGCTGCTACCCAAATGGAACAGGATATGCACTTAGTTCTGTTGAAGGGCGGGTTGCGATGGAATTCTTTGACCTCTCTGAGGCTAGCCAGGCAAAGAAatatgcattcaagtgtcacagaaaatctgaagctggaagggatattgtttatcctgtaaatgccatggcattccaccccatATATGGTACATTTGCCACAGGAGGTTGTGACGGTTTTGTTAATGTATGGGACGGAAACAACAAAAAGAGGCTATACCAGTATTCAAAATATCCAACTAGCATTGCTGCACTATCATTTAGCAGAGATGGACGCCTCCTGGCTGTTGCATCAAGTTACACATTTGAAGAGGGACCTAAAACCAATGAACAAGATGCTATCTACGTTCGCAGCGTGAATGAGATTGAGGTCAAGCCAAAACCCAAAGCCTATCCCAATCCTACAGCTTGA 1023 0.4252 MAATTVVAGRELSNPPSDGISNIRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSAGADNTVRRLLFSTNKEDILGKHDAPVRCIEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYQQPERVYSLSLVGHRLVVATAGRHVNVYDLRNMSIPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGPKTNEQDAIYVRSVNEIEVKPKPKAYPNPTA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00028 340 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 8 335 - -
Car08g00028 340 SUPERFAMILY WD40 repeat-like 16 303 IPR036322 GO:0005515
Car08g00028 340 Pfam WD domain, G-beta repeat 94 126 IPR001680 GO:0005515
Car08g00028 340 Pfam WD domain, G-beta repeat 228 269 IPR001680 GO:0005515
Car08g00028 340 Pfam WD domain, G-beta repeat 18 45 IPR001680 GO:0005515
Car08g00028 340 SMART WD40_4 5 45 IPR001680 GO:0005515
Car08g00028 340 SMART WD40_4 134 170 IPR001680 GO:0005515
Car08g00028 340 SMART WD40_4 87 126 IPR001680 GO:0005515
Car08g00028 340 SMART WD40_4 221 269 IPR001680 GO:0005515
Car08g00028 340 SMART WD40_4 48 85 IPR001680 GO:0005515
Car08g00028 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 126 IPR001680 GO:0005515
Car08g00028 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 278 IPR001680 GO:0005515
Car08g00028 340 Gene3D - 5 334 IPR015943 GO:0005515
Car08g00028 340 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 126 - -
Car08g00028 340 PANTHER MRNA EXPORT FACTOR AND BUB3 8 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00028 Car-Chr8 269911 273275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00028 94 302 U-box Gene Family AT2G33340 25.352 7.76e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00028 K02180 - gmx:100808389 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00028 08 269911 273275 Car08g00028 08 269911 273275 ECH