Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00008 ATGGAGGAAGAGGAAGTGATGTCTTGCTCCTCTTCTGATTCCGGTGATGAAGAATTTGAAGTTGAAATTGAACAACTCAAATCTCAGAATGTGGAAGCCCTCCTCAGGGGTAACCTCATCGTAAAGAGACAATCGTTGCTACCGCGAGTATTGTCAGTAGGTACAACAAATGGTGGCGCTGTTTGCAGAAAGCCATTTAAACCTCCATCCTCTAAATCCGATGCTAATTATAACAATAATCAAGACCTTACTCGTAGACTCTCTGCTCGCAAGAGGTTTGTCCCTTGGGGCTCTACTACTCCTACCCCCATTCCCGTACCTTTATCAGAGTTGAATTTGAATTTGAATTTAAATGTCGCTGAGGAGGAGGCTAAACCGCCACCTTTGCCACCTGGAATTGATCCTCTAATACTGTGGCACCCTCCCCAACAACCCGACCATGATGACTCTTCTAATTCTAATTTCACAAAAATAGCAGTTGATCCATTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAATTTATGTTTGACTGTGTTGCAGGACTATGTGACTCACCGGATATACATGGTTGCATTTTGGCAGATGATATGGGTTTGGGGAAGACACTGCAATCCATCACATTACTATATACTCTTATTTGTCAAGGCTTCGATGGGAGTCCTATGGTTAGAAAATCCATCATTGTCACTCCTACCAGCCTCGTCAGCAATTGGGAAGCTGAAATTAAAAAGTGGGTTGGAGAAAGACTTCGCCTTGTTGCTCTTTGTGAAACCACAAGACAAGATGTTATCTCTGGGATTAACAATTTTACAAGTCCCCAAAGCAATTTACAGGTGCTCATTGTTTCATACGAGACATTCCGCATGCATTCATCAAAGTTTAGTTCTAGTGGCTCGTGTGACCTTCTCATATGTGATGAGGCTCACAGACTCAAAAATGATCAAACAATAACAAACCGGGCATTGGCTGCTCTCCCGTGCAAACGTAGAATTTTGTTGTCAGGAACTCCATTGCAGAATGACTTAGAAGAATTCTTTGCAATGGTTAATTTCACTAATCCCGGAATATTGAGTGACATTGCACATTTTCGACGTTACTTTGAGGCGCCTATAATTTGTGGAAGAGAACCTGCTGCTACTGCAGAAGAGAAGAAACTTGGTACTGAACGCACTGCAGAATTAAGTGCCAAAGTTAACCAGTTCATATTAAGACGGACAAATGCATTATTATCAAATCACTTACCACCGAAGATAATTGAAGTTGTTTGTTGCAAGTTGACTCCGCTACAATCAGATCTGTATAAACATTTTATACAATCCAAAAATGTTAAACGGGCGATTACTGAAGAAGTGAAGCAATCGAAGATTTTGGCCTACATAACAGCTCTAAAAAAGTTATGCAATCACCCAAAGCTCATCTATGATACCATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGCATCCGATTTTTCCCTCCAAACATGTTATCTGGAAGATCTGGATCATGGACAGGAGGGCATGGAGGCTGGGTTGAGCTTTCCGGAAAAATGCAAGTCTTGGCAAGATTACTTGCTCAATTACGTCAGAGAACAAATGATCGCATTGTTCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCACAACTATGTCGGGAACAAAGGTACCCTCACTTGAGGCTTGACGGTGCTACATCAATCAGTAAAAGGCAAAAATTGGTCAACTGCCTGAATGACCCGTCTAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGGGCAAATCGACTTGTCCTGTTTGACCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTGTGGAGAGATGGACAGAAGAAAAGAGTTTACATTTATAGATTTTTGAGTGCTGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCGGGAGCAAAATGATAGTGTTGAGGCACAGGGTAACTTTCTTTCGACAGAGGATCTTCGCAATTTGTTTACTTTTGATGAGAATGTCAAATCAGAGATTCATGAAAAGATGCGATGCAGTCGGTGCCAAACATGTGATGAGCCACAAAATACTGATCTCCTATCAACAATGATTAATAGCGAATGCGATGATGATGAAACCTCTGATATAGGTGGATTTGCTGAAATTGCAGGCTGCTTAGGGAATTTGAAAAGATCAGAAAAGCAGGTTGCTTTTATATTTTGTTAG 2304 0.4154 MEEEEVMSCSSSDSGDEEFEVEIEQLKSQNVEALLRGNLIVKRQSLLPRVLSVGTTNGGAVCRKPFKPPSSKSDANYNNNQDLTRRLSARKRFVPWGSTTPTPIPVPLSELNLNLNLNVAEEEAKPPPLPPGIDPLILWHPPQQPDHDDSSNSNFTKIAVDPLLVRFLRPHQREGVQFMFDCVAGLCDSPDIHGCILADDMGLGKTLQSITLLYTLICQGFDGSPMVRKSIIVTPTSLVSNWEAEIKKWVGERLRLVALCETTRQDVISGINNFTSPQSNLQVLIVSYETFRMHSSKFSSSGSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILSDIAHFRRYFEAPIICGREPAATAEEKKLGTERTAELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSDLYKHFIQSKNVKRAITEEVKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPNMLSGRSGSWTGGHGGWVELSGKMQVLARLLAQLRQRTNDRIVLVSNYTQTLDLFAQLCREQRYPHLRLDGATSISKRQKLVNCLNDPSKDEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQREQNDSVEAQGNFLSTEDLRNLFTFDENVKSEIHEKMRCSRCQTCDEPQNTDLLSTMINSECDDDETSDIGGFAEIAGCLGNLKRSEKQVAFIFC 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00008 767 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 526 687 IPR001650 -
Car08g00008 767 Gene3D - 409 719 IPR027417 -
Car08g00008 767 SMART helicmild6 553 637 IPR001650 -
Car08g00008 767 Gene3D - 431 700 - -
Car08g00008 767 Gene3D - 140 408 IPR038718 -
Car08g00008 767 PANTHER SNF2/RAD54 FAMILY MEMBER 44 718 - -
Car08g00008 767 CDD DEXHc_RAD54 168 409 - -
Car08g00008 767 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 359 IPR014001 -
Car08g00008 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 409 IPR027417 -
Car08g00008 767 Pfam SNF2-related domain 171 477 IPR000330 GO:0005524|GO:0140658
Car08g00008 767 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 44 718 - -
Car08g00008 767 SMART ultradead3 164 367 IPR014001 -
Car08g00008 767 CDD SF2_C_SNF 520 648 - -
Car08g00008 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 715 IPR027417 -
Car08g00008 767 Pfam Helicase conserved C-terminal domain 528 636 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00008 Car-Chr8 154354 161444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00008 194 657 RAD5 or RAD16-like Gene Family AT3G16600 25.000 1.17e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car08g00008 SNF2_N 1e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00008 K10875 - gmx:100781631 1239.56