Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03428 ATGGCTTCTCTGCTCCATCCAACTACAACTCCTAACACCACCACACTTAAGCAGCCGCGTAATAATTGCTTCTGTCCCTTAAAACCCACCATTCCATACAATGTTTCTTTCTTAACTAACACAAACCGTTTCAAGACCAATTCTACTAAGTGCTATGCATTTTTTGATAATGTGGACCACTTCCCTGCTCTCCTCCGATCAGGACTGCTTCAGTTTGAAGATCTACCAGACATGCAGAGGTGTGAAGTTCTCGTGTTTGGTGCTCTCATATGGCTTTACTTAACTGCAAGACCTGGTGTTCTCATTGGTGCCATTGATGCTTACCTTCTTGCTCCTCTTCAACTCGCTTTCGACAATCTTTCTGGAAGGAGAAACTTGAAGACCACTGATTTTCTTGTTGGAGATAAGCTCGGTGAAGGCTCCTTCGGTGTTGTTTATTCCGGTCTTTTGGATCCCAAATCTAAGGATAATAAAGTCATTCTTAAAAAGGTTAAGGTTGGAATCCAAGGGGCCGAAGAGTTTGGTGAGTTTGAGGAATGGTTCAATTACAGGCTATCTAGAGCAGCACCTGAAACATGTGCTGATTTCCTTGGAAGTTTCGTAGCTGATAAAACTAACTCACAGTTCATAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGACCGTACTCTTGCCGATTACATGAAACAACGCAACTTTCCTTCAAACTTAGAATCTGTAATGTTTGGACGCGTCTTGCAAGGTGTAGACTCTTCTAGGCGAAATGCATTGATCATCAAGCAGATCATGCGCCAGATAATTACTTCTCTAAAGAAAATTCATGATACAGGCATCGTTCACAGAGATATAAAGCCAGCCAACTTAGTGGTTACTAAACGGGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTGAGGATCGGAAAGAATTATATTCCCAACCGCACCCTTTTGGATCCCGACTATTGCCCTCCAGAACTATATGTACTCCCGGAAGAAACACCAAGTCCTCCACCGGAGCCTATTGCTGCTTTCTTTTCACCAATCCTATGGCAGTTAAACAGCCCTGATCTGTTTGATATGTACTCTGCTGGGATTGTACTCCTGCAAATGGCAATACCAACCTTAAGGTCTCCTGCTGCTTTGAAGAATTTCAATTTGGAAATAAAAACATGTGGATATGATTTGAAAAAATGGAGGGAGAATACTCGCCTCAGGCCCGACTTCCAAATTCTTGATAGTGAATCTGGTAGAGGGTGGGACTTAGCAACAAAGCTTATCTCTAAGAGAGGTCCCTTAAGAAGAGGACGTTTATCTGCTGCTTCAGCTTTGAGACATCCTTATTTTCTTCTGGGAGGTGATCAGGCAGCGGCAGTTCTTTCAAAATTAAGCTTAAGTAGAAAGTGA 1419 0.4264 MASLLHPTTTPNTTTLKQPRNNCFCPLKPTIPYNVSFLTNTNRFKTNSTKCYAFFDNVDHFPALLRSGLLQFEDLPDMQRCEVLVFGALIWLYLTARPGVLIGAIDAYLLAPLQLAFDNLSGRRNLKTTDFLVGDKLGEGSFGVVYSGLLDPKSKDNKVILKKVKVGIQGAEEFGEFEEWFNYRLSRAAPETCADFLGSFVADKTNSQFIKGGKWLVWKFEGDRTLADYMKQRNFPSNLESVMFGRVLQGVDSSRRNALIIKQIMRQIITSLKKIHDTGIVHRDIKPANLVVTKRGQIKLIDFGAATDLRIGKNYIPNRTLLDPDYCPPELYVLPEETPSPPPEPIAAFFSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLEIKTCGYDLKKWRENTRLRPDFQILDSESGRGWDLATKLISKRGPLRRGRLSAASALRHPYFLLGGDQAAAVLSKLSLSRK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03428 472 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 470 - -
Car07g03428 472 Pfam Protein kinase domain 260 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g03428 472 SMART serkin_6 131 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g03428 472 ProSiteProfiles Protein kinase domain profile. 131 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g03428 472 SUPERFAMILY Protein kinase-like (PK-like) 127 454 IPR011009 -
Car07g03428 472 Gene3D Transferase(Phosphotransferase) domain 1 251 455 - -
Car07g03428 472 Gene3D Phosphorylase Kinase; domain 1 118 220 - -
Car07g03428 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Car07g03428 472 ProSitePatterns Protein kinases ATP-binding region signature. 137 162 IPR017441 GO:0005524
Car07g03428 472 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 470 IPR044803 GO:0004674|GO:0009579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03428 Car-Chr7 62376378 62380054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03428 127 309 MAP Kinase Kinase Kinase AT3G13530 29.255 2.71e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Car07g03428 Pkinase 2.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03428 - - cam:101497342 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03428 07 62376378 62380054 Car03g01415 03 59485077 59490753 PCT