Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03406 ATGCATCGTGGTAAAAAAGAGCAAGATGATAATATAAGGAAAGGTCCATGGAAATCAGAAGAAGATGAGGTACTTGTTCAACATGTCAAAAAATATGGTCCTCGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCTTAGAACTGGCAAGTCTTGTCGTCTTCGTTGGGTCAATAAGCTCCGACCAAACCTCAAAAATGGGTGCAAGTTTAGTGTAGAGGAAGAAAGGATTGTGATAGACTTGCAGAGAGAATTTGGGAACAGGTGGGCTAAGATTGCATCCTCTTTGCCTGGAAGAACAGACAATGATGTCAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGCTTCTCAAAACATCATCATCATCAACAACAACCTTAAAGTCACACAAAAATAAAACTAAAGTTTCTGCCTCTGTTCCAACTTCAAAGGCTCCTAAGTTCAGTTCTTCATCAGAGGGAGAATCATCAACAAGGCCTCAATCATGCTCATTACCTTGCATTGAGAATTCTGAACAAGTTATTCAAATGGTGCCATTAGCAGATCTTATAAAAACCGAGCAACCGATTTTTGACACAAGCTACGTCGAACAAGAGTTTAATCCTTTTGCGAGCAATGAACACATTGCATTTCCTCAAATTTCAGAACTCCAAACTGATCTAACTTTTCCAATGGAAAGCCAACAAGACCTATTCGGAAGAGTTGATGATCAAAATTTATTTGATGTGTTTGGTCCCTTGGATTCATCTGAATTTGGAATGGTTCCACAACATCCTCTTAAATTCCCTTTCTTTGATCCATCAGAGAGTTGTAGAATTGATAGCAACAGAAACATTGATAGTTTCTTTGATGATTTCCCTCAGTACATGTTTGATGACATAGATCAGCCACCTTCAAGTCCATCTAAGCTCTGA 924 0.3918 MHRGKKEQDDNIRKGPWKSEEDEVLVQHVKKYGPRDWSSIRSKGLLLRTGKSCRLRWVNKLRPNLKNGCKFSVEEERIVIDLQREFGNRWAKIASSLPGRTDNDVKNFWSSRQKRLARLLKTSSSSTTTLKSHKNKTKVSASVPTSKAPKFSSSSEGESSTRPQSCSLPCIENSEQVIQMVPLADLIKTEQPIFDTSYVEQEFNPFASNEHIAFPQISELQTDLTFPMESQQDLFGRVDDQNLFDVFGPLDSSEFGMVPQHPLKFPFFDPSESCRIDSNRNIDSFFDDFPQYMFDDIDQPPSSPSKL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03406 307 ProSiteProfiles Myb-like domain profile. 70 113 IPR001005 -
Car07g03406 307 MobiDBLite consensus disorder prediction 122 166 - -
Car07g03406 307 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Car07g03406 307 CDD SANT 16 61 IPR001005 -
Car07g03406 307 CDD SANT 70 109 IPR001005 -
Car07g03406 307 PANTHER TRANSCRIPTION FACTOR DUO1 1 304 - -
Car07g03406 307 Pfam Myb-like DNA-binding domain 14 59 IPR001005 -
Car07g03406 307 Pfam Myb-like DNA-binding domain 70 109 IPR001005 -
Car07g03406 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Car07g03406 307 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car07g03406 307 SMART sant 13 63 IPR001005 -
Car07g03406 307 SMART sant 67 115 IPR001005 -
Car07g03406 307 Gene3D - 69 144 - -
Car07g03406 307 Gene3D - 14 66 - -
Car07g03406 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 117 IPR017930 -
Car07g03406 307 PANTHER TRANSCRIPTION FACTOR DUO1 1 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03406 Car-Chr7 62150216 62151877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03406 3 302 MYB Transcription Factor Family AT3G60460 49.363 1.46e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car07g03406 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03406 K09422 - gmx:100805384 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03406 07 62150216 62151877 Car07g03406 07 62150216 62151877 ECH