Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03397 ATGGGTGATAAAGAGGAtgagttgggtttgggtttgagtttgagtttgagtttAGGATATGGAGCAAATGCAAATAATGCTCCTTTGAAAGTGACTCACATGCACAAGCCTCCTCAATCGGTTCCAAATCAAAGGGTTTCCTTCAATAACTTTTTCCATTTTCATGATCTGAGTTCCGAAACGAGGTCGTTTATCGGTGGAATAGACGTGAACTCGCCGGCGACGGCTGCGTGCGACGATGAGAATGGAGGTTCATCTCCGAACAGTACAGTGTCAAGTATCAGCGGAAAGCGAAGCGAGAGAGAAGGAAATGGAGAAGAGAACGACGCAGTTGAGAGAGCCTCTTGTTCTCGAGGAGGGAGCGACGACGATGATGGAGGAGGATGCGGCGGCGACGGTGACTCTTCAAGGAAGAAGCTGAGATTATCGAAGGAACAATCGGTGTTGCTGGAAGAAACATTCAAAGAGCACAACACATTGAATCCGAAACAAAAGCAAGCATTGGCAAAGCAGTTGAATCTGATGCCCAGACAAGTGGAGGTGTGGTTTCAAAACAGGAGAGCAAGAACCAAGTTGAAGCAAACTGAAGTGGATTGCGAATACTTGAAGAGATGCTGTGAGACTCTAACCGAAGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAACTTAGGGCATTGAAGTTATCCCCACAACTCTACATGCACATGAACCCTCCCACCACTCTTACAATGTGCCCTTCGTGTGAGCGTGTCGCAGTGTCATCTGCATCCTCTTCATCAGCCAACGTCCCCTCTGCTCTGGCTCCAGCTAATCGCAACTCGATAGGCCCAAGCGTTCAGCGGCCAGTACCTCTCAACCCTTGGGCGGCAATGTCTATCCAAAACCGTTCCCGACCATGA 900 0.4689 MGDKEDELGLGLSLSLSLGYGANANNAPLKVTHMHKPPQSVPNQRVSFNNFFHFHDLSSETRSFIGGIDVNSPATAACDDENGGSSPNSTVSSISGKRSEREGNGEENDAVERASCSRGGSDDDDGGGCGGDGDSSRKKLRLSKEQSVLLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSANVPSALAPANRNSIGPSVQRPVPLNPWAAMSIQNRSRP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03397 299 Gene3D - 129 198 - -
Car07g03397 299 MobiDBLite consensus disorder prediction 260 280 - -
Car07g03397 299 Coils Coil 199 229 - -
Car07g03397 299 PANTHER - 8 293 - -
Car07g03397 299 ProSitePatterns 'Homeobox' domain signature. 168 191 IPR017970 GO:0000981|GO:0006355
Car07g03397 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 8 293 - -
Car07g03397 299 SMART halz 193 236 IPR003106 GO:0006355|GO:0043565
Car07g03397 299 MobiDBLite consensus disorder prediction 78 98 - -
Car07g03397 299 Pfam HD-ZIP protein N terminus 1 102 IPR006712 GO:0005634
Car07g03397 299 MobiDBLite consensus disorder prediction 99 120 - -
Car07g03397 299 CDD homeodomain 137 194 IPR001356 GO:0003677
Car07g03397 299 Pfam Homeodomain 137 191 IPR001356 GO:0003677
Car07g03397 299 MobiDBLite consensus disorder prediction 76 140 - -
Car07g03397 299 ProSiteProfiles 'Homeobox' domain profile. 133 193 IPR001356 GO:0003677
Car07g03397 299 MobiDBLite consensus disorder prediction 260 281 - -
Car07g03397 299 Pfam Homeobox associated leucine zipper 193 227 IPR003106 GO:0006355|GO:0043565
Car07g03397 299 SMART HOX_1 135 197 IPR001356 GO:0003677
Car07g03397 299 SUPERFAMILY Homeodomain-like 122 194 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03397 Car-Chr7 62062765 62065568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03397 38 296 Homeobox Transcription Factor Family AT3G60390 63.370 7.38e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car07g03397 HD-ZIP_N 5.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03397 K09338 - gmx:100810641 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03397 07 62062765 62065568 Car07g03397 07 62062765 62065568 ECH