Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03354 ATGCCTCCGAAGACGGCGAAGAGAGGTGCGGCGGCTGGTGCCGCGAAGAGGGGTGGCAGAGGAACGAGAGGGACTCCTAAGACTGCACAGAATCAGCAGCAGCAATCTGAATCTGTGGAGGAGAAGATGGTGATTGAGGAAAAACCTGTTGTTGAAGAGAATCCTGTTGTTGAGGAAAAACCTGTGGTTGAAGATAATCCTGTTGTTGAAGATAAAGCTATTGATATGAACCAAATTGCTCCAGAGGCTGCAGAAGAAGCTAATAGGGTTCCTGCGGTGAAAAACGAAGAAGAGGAGGTTAAGGAGTCCATAGATGAATATGAGAAAGATGAACGTCTAGATTTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGTGGGGTTGATTACGATGAGAAGGAAATTGAACCAGAAGAGGTTCATGAGGTGGGAGATGAAGTTGAGGAAGAAGCTGAAGATAATGTTGGTGAAGAAGAAGGTGATACAGGTGAGGAAGAAGTTGAAGATGTTCATGATGAAATTGAGGGTGAAGAGGATGATGAGCATGCTGATGAGGAGCATGAGCATGCGGAGTTGGCTGATGTGGAGGAAGAGGAACACCGTGAAGTTGTGAAGGAGAGGCGAAAGCGGAAGGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTTTTTGGTGAAGTTGGGGTTGTTACTGAGGTCAGGCTGATGATGAATCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAAATGTGGAGCAAGCAAAACGAGCTGTAGCAGAGCTTAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAGCATTATGGAGTTACAACTGTCGAGGATATTACTTTGGTAGAAGATTCTAATGATAAAGGAACAAACCGTGGATTTGCATTCTTGGAATTTTCCTCTCGTTCAGATGCTATGGATGCCTTTAAGAGACTGCAGAAGAGGGACGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCATTTGCAGATTCTTTTATTGACCCGGGTGATGAAATTATGTCACAGGTTAAAACTGTGTTTATTGATGCACTGCCTCCTTCATGGGATGAAGATTACGTCCGGATTATTCTCAAGAAATTTGGTGAGATTGAAAAGATTGAGCTTGCTAGGAACATGCCAGCTGCTCGTAGGAAGGACTATGGATTTGTTACCTTTGGCACACATGATGCTGCTACAAGATGTGCTGAAAGCATTACTGGTACAGAATTGGGTGAAGGTGACAAGAAGGCAAAGGTGAGGGCTAGGTTATCAAGGCCACTTCAGAGAGGCCGTGGAAAACATGTTGGCCGTGGCGACTATCGCCCGGGTCGTGGATCTGGAATAATCTCAAGACCTTCCTGGAACCGACCTGCACCCCGTAGTTTTTCTTCACGTGGGGCAAGAGGAATTGGTAGTCGTGTTCTTCCAGTCAGGTCTGTTAGTGCTAGAGATAGACGCCCCATCATGTCTGTGCCAGTTAGAAGTAGGCCACTGGCTCCTCCAGCTAGAGCTTATGATAGAAGACCAGCTGCTGCCGCATATTCAAAAATTAGCACCAAGAGAGATTATGGTCGGCGTGAGGATCTACCACCACCAAGAAGTAGAGTTGCTGTAGATTATGGATCAAGGGTGTCCTCTGAAAGACGCCCATCTTATAGGGATTATCCACCCCGTGGATCTGGCTACTCCGATCTCCCAAGAAGTACAACCCGTGCTGCACCAAGGAGAGGTTATGTGGATGATGGTTACAGCCAAAGATATGAGAGGCCCCCTCCTCCTCCTCCCACTGCCCATCCAAGTTATCGTGAAGGACGTGCTCGTGATTATGATTCTCTATCTGGTTCAAAACGTTCTTATGCTGCTGTGGATGATGTTCCCCCGCGATATGCTGATACTGGTGCTCGCCAATCAAGAGCTCGATTGGAATATGATTATGGTGGCAACGCTTCACAGTATGGTGATTCTTATAGCGATAGAGTTGGAAGATCTAGTCTTGGATATGGTGGTGGCAGCCGAAGTTCTATTTCTGGTCAAGATTCACATGGGATGTATAGCAGTCGACAGGGCATGAGTTATGGTGGAGGCTCCTTTGGTGGTAGTGATGTTGGAGGCATGTACTCATCAAGTTATGGTGGTGATTATGTTTCTCGTGGAAGTGATGTTGGCGGCAGCTCATATTCATCAATGTATTCTGGCAGGGGTGTGGGTGGCAGTAGCAGTTACATGGGTGGTGGTGGATCGGGATCTTATTATTGA 2400 0.4604 MPPKTAKRGAAAGAAKRGGRGTRGTPKTAQNQQQQSESVEEKMVIEEKPVVEENPVVEEKPVVEDNPVVEDKAIDMNQIAPEAAEEANRVPAVKNEEEEVKESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKEIEPEEVHEVGDEVEEEAEDNVGEEEGDTGEEEVEDVHDEIEGEEDDEHADEEHEHAELADVEEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTTVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRIILKKFGEIEKIELARNMPAARRKDYGFVTFGTHDAATRCAESITGTELGEGDKKAKVRARLSRPLQRGRGKHVGRGDYRPGRGSGIISRPSWNRPAPRSFSSRGARGIGSRVLPVRSVSARDRRPIMSVPVRSRPLAPPARAYDRRPAAAAYSKISTKRDYGRREDLPPPRSRVAVDYGSRVSSERRPSYRDYPPRGSGYSDLPRSTTRAAPRRGYVDDGYSQRYERPPPPPPTAHPSYREGRARDYDSLSGSKRSYAAVDDVPPRYADTGARQSRARLEYDYGGNASQYGDSYSDRVGRSSLGYGGGSRSSISGQDSHGMYSSRQGMSYGGGSFGGSDVGGMYSSSYGGDYVSRGSDVGGSSYSSMYSGRGVGGSSSYMGGGGSGSYY 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03354 799 MobiDBLite consensus disorder prediction 109 187 - -
Car07g03354 799 MobiDBLite consensus disorder prediction 715 735 - -
Car07g03354 799 Gene3D - 296 378 IPR012677 -
Car07g03354 799 MobiDBLite consensus disorder prediction 539 684 - -
Car07g03354 799 MobiDBLite consensus disorder prediction 774 799 - -
Car07g03354 799 MobiDBLite consensus disorder prediction 1 51 - -
Car07g03354 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Car07g03354 799 Gene3D - 140 295 IPR012677 -
Car07g03354 799 Gene3D - 382 499 IPR012677 -
Car07g03354 799 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 799 - -
Car07g03354 799 MobiDBLite consensus disorder prediction 81 205 - -
Car07g03354 799 Coils Coil 90 113 - -
Car07g03354 799 MobiDBLite consensus disorder prediction 89 108 - -
Car07g03354 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 363 IPR000504 GO:0003723
Car07g03354 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 394 459 IPR000504 GO:0003723
Car07g03354 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Car07g03354 799 MobiDBLite consensus disorder prediction 188 205 - -
Car07g03354 799 MobiDBLite consensus disorder prediction 24 39 - -
Car07g03354 799 SUPERFAMILY RNA-binding domain, RBD 292 380 IPR035979 GO:0003676
Car07g03354 799 SMART rrm1_1 216 289 IPR000504 GO:0003723
Car07g03354 799 SMART rrm1_1 296 375 IPR000504 GO:0003723
Car07g03354 799 SMART rrm1_1 393 468 IPR000504 GO:0003723
Car07g03354 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 379 IPR000504 GO:0003723
Car07g03354 799 MobiDBLite consensus disorder prediction 474 516 - -
Car07g03354 799 CDD RRM_SF 394 468 - -
Car07g03354 799 CDD RRM_SF 297 364 - -
Car07g03354 799 MobiDBLite consensus disorder prediction 711 735 - -
Car07g03354 799 MobiDBLite consensus disorder prediction 567 581 - -
Car07g03354 799 PANTHER RNA RECOGNITION MOTIF 1 799 - -
Car07g03354 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 392 474 IPR000504 GO:0003723
Car07g03354 799 CDD RRM_SF 217 288 - -
Car07g03354 799 SUPERFAMILY RNA-binding domain, RBD 216 459 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03354 Car-Chr7 61593468 61599795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03354 210 473 Eukaryotic Initiation Factors Gene Family AT1G49760 24.415 4.19e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03354 - - aprc:113850151 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03354 07 61593468 61599795 Car07g03354 07 61593468 61599795 ECH
Car07g03354 07 61593468 61599795 Car03g01686 03 62553239 62558809 PCT