LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g03281	atgaacataagggcgcagAGTCACAATTTCCCTCAGTTCAAACCTGAGGAAATAACTGGTATCATGAATGATTTTGCTGAGCCTGTAACATTTGGTCCAACTGGATTATATATTGGTGGCACAAAATATATGGCGATCCAAGGTGAACCAGGAGCTGTCATTCGAGGGAAGAAGCTGCGAGAGCGTAATTTTATGTTGCATAAGGAATCAAGGCAACACGACCCATATGGTATTTTTAATACAGAAGAGTCCATTCCAAGGGATATTGGTCCTTATAAGAATTTGGTTATATTCACATCAAGTTCTATGTATCCAAAGTTCATCTCAAGCCCTTCCTCTGTTCCATTACTAATAAAGTTAAGGATCTTGATGAGCAATCTTCAGACAGTTGATTTGAAAGGCCTTACAAATCAACAAAAATTAGCATTTTGGATCAACTTGTACAATGCTTGTATCATGCATGGATTCATCCAATATGGAGTGCCATCCACCCCAGAAAAGCTAACAGCATTGATGAACAAGATGTGCAATTTTGGTTGTAAGCCATGGGGATCCCCTGCAAATCTTGCAAACAATTCTCCTTGCTTCTAA	591	0.3773	MNIRAQSHNFPQFKPEEITGIMNDFAEPVTFGPTGLYIGGTKYMAIQGEPGAVIRGKKLRERNFMLHKESRQHDPYGIFNTEESIPRDIGPYKNLVIFTSSSMYPKFISSPSSVPLLIKLRILMSNLQTVDLKGLTNQQKLAFWINLYNACIMHGFIQYGVPSTPEKLTALMNKMCNFGCKPWGSPANLANNSPCF	196

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g03281	196	PRINTS	Plant profilin signature	23	37	IPR005455	GO:0003779
	Car07g03281	196	PRINTS	Plant profilin signature	42	51	IPR005455	GO:0003779
	Car07g03281	196	Gene3D	Dynein light chain 2a, cytoplasmic	1	71	-	-
	Car07g03281	196	PANTHER	TRANSPORTER, PUTATIVE-RELATED	63	175	-	-
	Car07g03281	196	Pfam	Profilin	2	65	IPR005455	GO:0003779
	Car07g03281	196	SUPERFAMILY	Profilin (actin-binding protein)	3	61	IPR036140	-
	Car07g03281	196	PANTHER	EXPRESSED PROTEIN	63	175	-	-
	Car07g03281	196	Pfam	Protein of unknown function, DUF547	133	174	IPR006869	-
	Car07g03281	196	PRINTS	Profilin signature	35	49	IPR005455	GO:0003779
	Car07g03281	196	PRINTS	Profilin signature	11	31	IPR005455	GO:0003779

Showing 1 to 10 of 10 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g03281	Car-Chr7	60437206	60441270	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car07g03281	2	59	Cytoskeleton Gene Families	AT5G56600	67.241	1.26e-22	86.3

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g03281	-		-	cam:101500595	366.311

Showing 1 to 1 of 1 entries