Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03277 ATGGAAGAACAAGATGAAGAATTCTTCAAAAAAACTGTTACCACAAAGTATGTGAAATCTAATTTGATCTCTTCTTCAATGCCTAAAGTTGTTAGAATCACACTTAATGATGATTATGCCACAGATTCTTCAAGTGATGAAGAAAAATACAAAGGAAATGGTAGAAGAAAGGTAAAGAAAATGGTGAGTGAGATCAAACTAATTCCATGTTCCACTCTTTCTAACATAGATCATGAAAACAACAATGGCAATGATGGTGATCATGAAGGTTTTGGgaagaagaagaagaagaacaacaacaataataataagatgaGACAGAGACATAAACCTATGAGACATGTCATAACTTCAACAAATGATTGTAAGTACCGCGGCGTTCGACAACGGCCGTGGGGGAGATGGGCTGCTGAGATTCGTGATCCTAAGCTTCAAATTAGAAGATGGTTAGGGACTTTTGACACTGCTGAAGATGCTGCTATGGCTTATGATAGGGCTGCAATTTTTTATAAAGGTTGTGATGCCATTACCAATATCATCAAACCACCTCCGAAACCTACGAAGTTGAGTCTAGCAGAAGAGACTAGTTCTTCGATGCCAAAATTGAATCTAACAGAAGATTTTAGTCTCTTAAATGTGTCTACATTGAATCTGGCTGGAGGGGTTAGTCTCTCGGAGCCGAGTTTGATTGAAGATGTTAGTCTATTCGAGATGAGAGATGTATCCACATTTAATGATAGTTCTGTTGTTGTTGATTGTGATGGCTATAAAAAGAAGGAGGATTGTAAAGGTTGTTCATTTTCTTCTCCTATATCAGTTATTGAATTTAACAATGAAAGGATAAATGAGCAAAAATGGATTAGTGGTGTGACTGAAGAAAATTATATGGATGATGATTTTATGTTTGTTGAACCAAATGGTTCTTCTTTTTATGAACCTCTTCTTACAATGGTTTCAAATGAAAGTAAttgcattgttgatattccttttcattttgaggatgattttgaGTCATGTAAAAGGGAGATTGATAATTACTTCGAGAATGGCCCTTTGTCAAAGCattga 1068 0.3333 MEEQDEEFFKKTVTTKYVKSNLISSSMPKVVRITLNDDYATDSSSDEEKYKGNGRRKVKKMVSEIKLIPCSTLSNIDHENNNGNDGDHEGFGKKKKKNNNNNNKMRQRHKPMRHVITSTNDCKYRGVRQRPWGRWAAEIRDPKLQIRRWLGTFDTAEDAAMAYDRAAIFYKGCDAITNIIKPPPKPTKLSLAEETSSSMPKLNLTEDFSLLNVSTLNLAGGVSLSEPSLIEDVSLFEMRDVSTFNDSSVVVDCDGYKKKEDCKGCSFSSPISVIEFNNERINEQKWISGVTEENYMDDDFMFVEPNGSSFYEPLLTMVSNESNCIVDIPFHFEDDFESCKREIDNYFENGPLSKH 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03277 355 Gene3D AP2/ERF domain 122 180 IPR036955 GO:0003700|GO:0006355
Car07g03277 355 SUPERFAMILY DNA-binding domain 123 179 IPR016177 GO:0003677
Car07g03277 355 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Car07g03277 355 Pfam AP2 domain 122 172 IPR001471 GO:0003700|GO:0006355
Car07g03277 355 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Car07g03277 355 CDD AP2 122 178 IPR001471 GO:0003700|GO:0006355
Car07g03277 355 MobiDBLite consensus disorder prediction 81 96 - -
Car07g03277 355 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 288 - -
Car07g03277 355 MobiDBLite consensus disorder prediction 75 108 - -
Car07g03277 355 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Car07g03277 355 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Car07g03277 355 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 10 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03277 Car-Chr7 60382843 60383910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03277 11 188 AP2-EREBP Transcription Factor Family AT4G27950 41.848 1.36e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car07g03277 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03277 - - cam:101501547 640.573