Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03249 ATGGGGCCAAACGCTGCGGTGGTGAAACAAGCGGAGCTTTTGAGAATAGACGGAAACAATTACTTCAAGAAAAACCGTTTCGGAGCTGCTATCGATGCTTACACTGAGGCAATCACGCTTTGCCCTAATGTTCCGATTTATTTTACGAATCGTGCTCTGTGCCATCTCAAGCGAAATGAATGGGAGAGAGTGGAGGAAGACTCTAGAAGAGCAATTCAGCTGGACAACCATTCCGTTAAGGCCCACTATATGTTGGGACTTGTATTGCTACAGAAACAAGAATTAGCCAAAGGTATCAAAGAATTGGAAAAGGCTTTGAATCTTGGGAGAGGTGCCAATCCTAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCGAAGGCAAAATATCTAGAGTGGGAACGTTCCTCGTCCGAGAGATCCTGGGAATTACAGAACTTAAAAGAAGCTTGTGAGTCTGCTCTAAAGGAAAAACATTTTCTTGACGTCTCTGAAATGGAAGGATTTGTAGATGATACTACTACTTCCCATTTGAAACAGTTGGAGGCTTTAGAAAGAGTCTTCAATAAAGCTGCAGAGGATGACAAACCATCTGAGGTGCCAGATTATCTGTGCTGTAGAATAACACTTGATATTTTTCATGATCCAGTAATCACTCCAAGTGGACTTACATATGAGAGGGCAGTGATTCTTGACCATCTTCAGAAGGTTGGTGAATTTGATCCGATCACGAGGGAACCACTTGATCCATCACAACTAATACCAAACTTGGCCATTAAGGAAGCAGTCGAACAATTCTTGGACAAACATTGGTGGGCTTACAAGATAGATTAA 837 0.4229 MGPNAAVVKQAELLRIDGNNYFKKNRFGAAIDAYTEAITLCPNVPIYFTNRALCHLKRNEWERVEEDSRRAIQLDNHSVKAHYMLGLVLLQKQELAKGIKELEKALNLGRGANPKGYMVEEIWQELAKAKYLEWERSSSERSWELQNLKEACESALKEKHFLDVSEMEGFVDDTTTSHLKQLEALERVFNKAAEDDKPSEVPDYLCCRITLDIFHDPVITPSGLTYERAVILDHLQKVGEFDPITREPLDPSQLIPNLAIKEAVEQFLDKHWWAYKID 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03249 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 274 IPR013083 -
Car07g03249 278 Pfam U-box domain 201 272 IPR003613 GO:0004842|GO:0016567
Car07g03249 278 SUPERFAMILY RING/U-box 194 274 - -
Car07g03249 278 ProSiteProfiles U-box domain profile. 200 274 IPR003613 GO:0004842|GO:0016567
Car07g03249 278 SUPERFAMILY TPR-like 9 128 IPR011990 GO:0005515
Car07g03249 278 SMART Ubox_2 204 267 IPR003613 GO:0004842|GO:0016567
Car07g03249 278 PANTHER OS08G0113300 PROTEIN 5 277 - -
Car07g03249 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 5 277 IPR045200 GO:0000209|GO:0061630
Car07g03249 278 SMART tpr_5 45 78 IPR019734 GO:0005515
Car07g03249 278 SMART tpr_5 79 112 IPR019734 GO:0005515
Car07g03249 278 SMART tpr_5 11 44 IPR019734 GO:0005515
Car07g03249 278 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Car07g03249 278 Pfam Tetratricopeptide repeat 80 108 IPR019734 GO:0005515
Car07g03249 278 Gene3D Tetratricopeptide repeat domain 6 141 IPR011990 GO:0005515
Car07g03249 278 CDD RING-Ubox_CHIP 201 267 IPR045202 -
Car07g03249 278 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03249 Car-Chr7 60101327 60105686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03249 11 277 U-box Gene Family AT3G07370 68.539 3.53e-140 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03249 K09561 - gmx:100796519 489.574