Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03175 ATGGCAATGTCCTGCAAGGATGGTAATAAGCATTTAATGGATAATGGAAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCTCTTGAGAGGCTTTATCATGACTGCCCTAAACCAAGTTCTATTCGACGACAACAACTCATACGCGAGTGTCCAATTCTCTCCAATATTGAGCCTAGACAAATCAAAGTTTGGTTCCAAAATAGAAGATGTAGAGAGAAGCAGAGAAAAGAATCTTTCAGGTTACAAGGAGTGAATAGGAAATTGACTGCCATGAACAAGCTGCTGATGGAGGAAAATGATAGGTTGCAAAAGCAGGTGTCTCATCTGGTGTACGAGAATGGTTATTTTCGTCAAAACACCCAAAATACTGCGCAGGCAACCAAAGACACGAGCTGTGAATCAGTTGTGACGAGTGGTCAGCACAACATGTCTAGTCAACATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAATTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCTTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCAGAAATCCTCAAAGACCGTCCTTTGTGGTTTCGCGATTGCCGAGCTATTGATATTGTCAATGTGCTGCCCACTGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCACCTGCTCGAGACTTCTGGTTGTTACGCTACACTTCTGTTGTAGAAGACGGCAGCTTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCCGCATTTTGTTAGAGCAGACATGCTGCCTAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACGTTGTTGATCATATGGATTTGGAGCCATGGAGTGTGCCAGAAGTTCTGCGTCCACTATATGAATCATCAACAATGCTGGCTCAGAAGACAACTATGGCGGCCCTACGTCATCTAAGGCAGATTTCGCATGAAGTTTCTCAGTCCAACGTCACTGGGTGGGGTAGAAGACCAGCAGCTCTGCGAGCACTTAGCCAGAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAAGGATGGACAATGATGGGCAATGATGGTGTTGATGATGTTACTATTCTAGTGAATTCATCACCTGAAAAATTAATGGGTCTGAATCTGTCCTTTGGCAATGGATTTCCTTCTGTCAGTAATGCAGTGTTATGTGCCAAGGCATCAATGCTATTACAGAATGTGCCTCCAGCCATTCTCTTAAGGTTCCTGCGGGAACATAGATCAGAATGGGCAGACACTAACATGGATGCTTACACAGCTGCTGCCATTAAAGTTGGCCCTTGTAGCTTAACAGGATCTCGCATCGGAAACTATGGGGGTCAAGTTATACTCCCACTAGCTCACACTATTGAGCATGAGGAGTTTTTGGAAGTCATTAAGTTGGACGGAGTTTCACATTCTCCTGAAGACGCAATGTTGCCCAGAGAATTGTTTCTGTTGCAACTCTGCAGTGGAATGGATGAGAATGCTATTGGCACCTGTGCAGAACTTATATTTGCTCCAATCGATGCCTCATTTGCTGATGATGCCCCACTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAAGAGGCTTCCAGCCCTAATCGCACTCTTGACCTTGCATCTGCCCTTGACATTGGCCCGACTGGAAACCGAGCTTCAAGTGATAATGCTGGAAATTCTGGCTGTGTGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGAGAATGTAGCATGCATGGCACGTCAATATGTTCGCAGTATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATCTCAGTCCACATGGTGGGCTGAGATCACCATTAGGTACTCCTGAAGCACAAACCCTGGCTCATTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTGCTTAAATCTAATAACGAAGGAAAAGAATCTATACTCAAGTCCTTGTGGCATCACTCAGATGCTGTATTATGCTGCACTCTAAAGGCATTGCCAGTGTTCACTTTCTCAAATCAGGCAGGGCTCGACATGCTGGAGACTACCCTAGTTGCATTACAAGATATAACTCTAGAGAAAATATTTGACGATCATGGTCGAAAAACTCTCTTTTCAGAATTTCCCCAGATTATTCAACAGGGTTTTGCATGTCTCCAAGGTGGTATTTGTCTCTCAAGCATGGGGCGACCTGTCTCATATGAGAGAGTTGTTGCTTGGAAGGTGCTGAATGATGAAGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2517 0.447 MAMSCKDGNKHLMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPRQIKVWFQNRRCREKQRKESFRLQGVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQNTQNTAQATKDTSCESVVTSGQHNMSSQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAIDIVNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVVEDGSLVICERSLKNTQNGPSMPPVPHFVRADMLPSGYLIRPCEGGGSIIHVVDHMDLEPWSVPEVLRPLYESSTMLAQKTTMAALRHLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTMMGNDGVDDVTILVNSSPEKLMGLNLSFGNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADTNMDAYTAAAIKVGPCSLTGSRIGNYGGQVILPLAHTIEHEEFLEVIKLDGVSHSPEDAMLPRELFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDIGPTGNRASSDNAGNSGCVRSVMTIAFEFAFESHMQENVACMARQYVRSIISSVQRVALALSPSHLSPHGGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGKESILKSLWHHSDAVLCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKTLFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNDEENAHCICFMFMNWSFV 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03175 838 Pfam MEKHLA domain 695 837 IPR013978 -
Car07g03175 838 SUPERFAMILY Homeodomain-like 16 78 IPR009057 -
Car07g03175 838 SMART HOX_1 14 80 IPR001356 GO:0003677
Car07g03175 838 Pfam START domain 161 369 IPR002913 GO:0008289
Car07g03175 838 SMART START_1 160 370 IPR002913 GO:0008289
Car07g03175 838 ProSiteProfiles START domain profile. 151 365 IPR002913 GO:0008289
Car07g03175 838 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Car07g03175 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 838 IPR044830 GO:0003700
Car07g03175 838 MobiDBLite consensus disorder prediction 123 154 - -
Car07g03175 838 SUPERFAMILY Bet v1-like 160 370 - -
Car07g03175 838 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Car07g03175 838 CDD bZIP 69 108 - -
Car07g03175 838 CDD START_ArGLABRA2_like 155 370 - -
Car07g03175 838 CDD homeodomain 17 77 IPR001356 GO:0003677
Car07g03175 838 Coils Coil 86 106 - -
Car07g03175 838 MobiDBLite consensus disorder prediction 123 150 - -
Car07g03175 838 Gene3D - 195 376 IPR023393 -
Car07g03175 838 Gene3D - 10 81 - -
Car07g03175 838 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03175 Car-Chr7 59266421 59273888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03175 1 790 Homeobox Transcription Factor Family AT1G52150 83.207 0.0 1384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car07g03175 START 1.7e-53 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03175 07 59266421 59273888 Car07g03175 07 59266421 59273888 ECH
Car01g02755 01 52935911 52944590 Car07g03175 07 59266421 59273888 PCT