Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03157 ATGTGGCAAAGAAGCCACGAAAAGGGTTCTTTAGATGAGATTAAATTGGAGCTTAGACTTGCTCCACCTGGTGAACAAAATGAAAAAAGCATTAAAAATACATTAAACTTGCAGGATGTTGAGAATAATGCATTTTCAATGCCTTCTTCTGTTAATTCAGCTTTGTCTAACAGATCTCAGAATAGAAATGGTTCTAGTCCAGTAGTTGGTTGGCCTCCGATTCGTTCTTACAGGAAGAACATTGCAACCGGAGGCTCTTCTAAGTCGCCAACCGAGTCGAGGCTTGTGGTTCCGGACACGGTTGAAGCTTGCAACAAACCTATTAACAACTCTTGTAAAGGTTTGTTTGTGAAGATCCATATGGATGGTGTTCCTATTGGAAGAAAAATAAACATTAATGCTTATGACAGCTATGAAAAACTTTCCTCTGCTGTTGATCAGCTCTTTAGAAGCCTACTCGAAGAGATGAATTTATCTCACTACTATTCTGCTAAAAGAGATTCCTCTAGAAATAACAAGAAGCAAGAGGAAGATAAAAGCTCAACAGGTTCATTGATTGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTGAGAGTGTCCAAGACTTCTGATATTCCTGCTTTTAACCGTGAGTATTATTAG 711 0.3924 MWQRSHEKGSLDEIKLELRLAPPGEQNEKSIKNTLNLQDVENNAFSMPSSVNSALSNRSQNRNGSSPVVGWPPIRSYRKNIATGGSSKSPTESRLVVPDTVEACNKPINNSCKGLFVKIHMDGVPIGRKININAYDSYEKLSSAVDQLFRSLLEEMNLSHYYSAKRDSSRNNKKQEEDKSSTGSLIGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVSKTSDIPAFNREYY 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03157 236 SUPERFAMILY CAD & PB1 domains 114 224 - -
Car07g03157 236 Pfam AUX/IAA family 53 228 IPR033389 -
Car07g03157 236 MobiDBLite consensus disorder prediction 48 70 - -
Car07g03157 236 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 30 232 - -
Car07g03157 236 MobiDBLite consensus disorder prediction 164 184 - -
Car07g03157 236 Gene3D - 109 234 - -
Car07g03157 236 ProSiteProfiles PB1 domain profile. 114 227 IPR000270 GO:0005515
Car07g03157 236 MobiDBLite consensus disorder prediction 166 180 - -
Car07g03157 236 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 30 232 IPR003311 GO:0005634|GO:0006355
Car07g03157 236 MobiDBLite consensus disorder prediction 48 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03157 Car-Chr7 58819551 58822170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03157 117 222 B3 DNA Binding Superfamily AT4G23980 29.245 6.41e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Car07g03157 AUX_IAA 4e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03157 K14484 - gmx:100793822 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03157 07 58819551 58822170 Car01g02744 01 52825860 52829793 ECH
Car07g03157 07 58819551 58822170 Car07g03157 07 58819551 58822170 ECH
Car01g02744 01 52825860 52829793 Car07g03157 07 58819551 58822170 PCT