Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03144 ATGTACCTTTTGTTCTTCCTAACAATACAAAGGTTCATCACATCAAACACACACGGCATCTGTATAACTAGTCAGTCTTCAATGGCAGCTCAAGGTAACATTTACAAGGATCAAAGTTTCATTTCATCACAAAAATTACAATCATCTATGGAAGGTCTAAATTGGAATGGTTCAGAAATTTTAGAGAGCACACCAATCTTGTGGAGTACTCATCATCAAGAACAAAACATGGAAGGAGACTACTCCTCCATATCAAAATCTCATATTCATCAAATACAAGAGATGGATCAGAAAGTTCAAACAAGTCACACAGTGATGATGCCAAACACAAATTTTTCAcagcatgcagcagcagcagcaTTAACAACCATGACAGTGAAATCAGGTGAAGCTGCTGTATCCAGCTGGAAAAAAGAACCTTTAATACTTCAATCATTTCAGTCATCTTCAGTCAATAAACCTtacaacagtagtactattactactactagtaccaactacATGCCAGATTTCAACATGGCCCACCAACAACAAAAACAACTCATCAAAAGTGGTTGTTCTTTTGATTGTTTAATTTCAGCTAGTACTAATAGCAACACAGACACTACTTCTATTGAAGATGATGATGGAATTTCAAACATATTTTCTGACTGCAGAAGAAGAAATTTATGGAACTTTAGTTATGCCACTACTGCTTCTAATTCATCTGCTGAAACTGATCATAGTAATGTTTCAAATGGTACTAATTACAAAAACAAAGACATGCAGTGTAATAAACTCAATGAACTTGATGAAACAATGTCTCAAACTTCATCAGATCAATTACAGTCCAAGGCAAGTGATCATCATTTTTTCAGTACTGTACAAAATTCTGTTTCTGTTGAAAATGGTTTTGGAATTTTCTCTGATAAACCACCAAAATGTAAGAAACCAAGATGGGAAAAGGGTCCATTTTCATCAAATATAAATTTCCAACAACCAAAATCATCAACAACATGTTGTTCTTCTTCATCAAATGAAGAGACTGATCCAGAAGCAGTAGCAGCAATGAAGGAAATGATGTATAGAGCAGCAGCATTTAGGCCAGTGAATTTTGGAATGGAAAATGATGTGATTGAAAAGCCTAAAAGAAAAAATGTTAAGATATCAAATGATCCACAAACAGTGGCTGCAAGGCATAGAAGGGAGAGAATAAGTGAGAAGATTAGAGTTTTGCAAAAGATTGTTCCTGGTGGAAGTAAAATGGACACTGCTTCAATGCTTGATGAGGCTGCAAATTATCTTAAGTTTCTTAGATCACAAGTTAAGGCACTTGAAAGTTTAGGGAACAAAGTTAATGCAATGGATTGTCCTTCAACTAGTATTGCATTCTCTTTTAACCCTTCTTTTCACATGCAAATTCATCCTAGTGATCATAACAatcatgattattattaa 1437 0.3285 MYLLFFLTIQRFITSNTHGICITSQSSMAAQGNIYKDQSFISSQKLQSSMEGLNWNGSEILESTPILWSTHHQEQNMEGDYSSISKSHIHQIQEMDQKVQTSHTVMMPNTNFSQHAAAAALTTMTVKSGEAAVSSWKKEPLILQSFQSSSVNKPYNSSTITTTSTNYMPDFNMAHQQQKQLIKSGCSFDCLISASTNSNTDTTSIEDDDGISNIFSDCRRRNLWNFSYATTASNSSAETDHSNVSNGTNYKNKDMQCNKLNELDETMSQTSSDQLQSKASDHHFFSTVQNSVSVENGFGIFSDKPPKCKKPRWEKGPFSSNINFQQPKSSTTCCSSSSNEETDPEAVAAMKEMMYRAAAFRPVNFGMENDVIEKPKRKNVKISNDPQTVAARHRRERISEKIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVNAMDCPSTSIAFSFNPSFHMQIHPSDHNNHDYY 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03144 478 Coils Coil 421 441 - -
Car07g03144 478 Pfam Helix-loop-helix DNA-binding domain 392 431 IPR011598 GO:0046983
Car07g03144 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 382 431 IPR011598 GO:0046983
Car07g03144 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 388 441 IPR036638 GO:0046983
Car07g03144 478 MobiDBLite consensus disorder prediction 318 340 - -
Car07g03144 478 MobiDBLite consensus disorder prediction 305 340 - -
Car07g03144 478 CDD bHLH_AtIND_like 383 441 - -
Car07g03144 478 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 58 470 IPR045843 GO:0003700|GO:0006355
Car07g03144 478 PANTHER TRANSCRIPTION FACTOR BHLH87 58 470 - -
Car07g03144 478 Coils Coil 475 478 - -
Car07g03144 478 SMART finulus 388 437 IPR011598 GO:0046983
Car07g03144 478 Gene3D - 387 449 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03144 Car-Chr7 58667062 58669164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03144 187 470 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.685 4.77e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car07g03144 HLH 4.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03144 - - vra:106773034 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03144 07 58667062 58669164 Car07g03144 07 58667062 58669164 ECH