Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03119 ATGGCTCTACCGCCATTCGATCCATATTACCTGTATCAGTCAGATGACCGGAGCAACATCAACACACTCTTCGTCTCCGGTCTCCCAGACGACGTGAAGGCGCGTGAAATCCACAACCTCTTTCGTCGCCGCCCAGGCTTCGACTCCTGCCAACTCAAGTACACCGGCCGCGCCAACCAGGTCGTTGCATTTGCTACGTTTTTCAATCATCAGGCAGCAATGGCAGCTTTGCACGCCCTAAATGGTGTGAAATTTGATCCTCAATATGGGTCTGTTTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGGAAGCGAAAACCAGGTGGTGGAGTCTATGTGGTTATAGATAAAAGGTCAAAGGGGGAAGCCAATGTTCAAGGATCGTCAAGTGATGATGGTGAAAGTGAACCTGACGAACCATCAGAAAATGGCAGCAGCCATGGTGATGTAGCAAACACACAAAGTGGTGATACTGCTGCTGTTGGCTCTGACAGTGTTGCACCTGTGGCAAGCGAGCAACACAAAAAGGGTGGTGGTGATGGAGGACCATGTTCCACTCTTTTTATTGCAAACCTTGGTCCAAACTGCACTGAGGATGAATTAAAGCAAGCTTTTTCTGTGTATGCTGGATTCAACTTGGTCAAAATGCGTTCTAGAGGAGGAATGCCTGTAGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGTTAAGGTCATGGAGGAGCTTCAGGGAAGCTTGCTTCCATCATCGGATCGGGGTGGCATGCACATAGAATATGCAAGGTCTAGAATGAGGAAGAAGCGTTAG 810 0.4778 MALPPFDPYYLYQSDDRSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQAAMAALHALNGVKFDPQYGSVLHIELARSNSRRKRKPGGGVYVVIDKRSKGEANVQGSSSDDGESEPDEPSENGSSHGDVANTQSGDTAAVGSDSVAPVASEQHKKGGGDGGPCSTLFIANLGPNCTEDELKQAFSVYAGFNLVKMRSRGGMPVAFADFEEIDQAVKVMEELQGSLLPSSDRGGMHIEYARSRMRKKR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03119 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Car07g03119 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 249 IPR000504 GO:0003723
Car07g03119 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Car07g03119 269 Gene3D - 17 108 IPR012677 -
Car07g03119 269 SMART rrm1_1 187 259 IPR000504 GO:0003723
Car07g03119 269 SMART rrm1_1 22 96 IPR000504 GO:0003723
Car07g03119 269 PANTHER RNA-BINDING PROTEIN-RELATED 13 257 - -
Car07g03119 269 MobiDBLite consensus disorder prediction 146 162 - -
Car07g03119 269 CDD RRM_RBPMS_like 21 96 - -
Car07g03119 269 SUPERFAMILY RNA-binding domain, RBD 21 248 IPR035979 GO:0003676
Car07g03119 269 MobiDBLite consensus disorder prediction 103 182 - -
Car07g03119 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 263 IPR000504 GO:0003723
Car07g03119 269 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 13 257 - -
Car07g03119 269 CDD RRM_scw1_like 184 262 - -
Car07g03119 269 Gene3D - 181 269 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03119 Car-Chr7 58352231 58357592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03119 17 250 Eukaryotic Initiation Factors Gene Family AT4G34110 23.616 6.04e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03119 - - cam:101503574 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03119 07 58352231 58357592 Car07g03119 07 58352231 58357592 ECH