Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03097 ATGGTGAAGGGTTTGATGTTTCAACAACAGCAACAAGTGGTGGATGAAAACATGTCAAATTTAACTTCTGCATCTGGTGAAGCTAGTGCTTCTTCAGGAAACAGAACTGAAATTGGTACTAGTTACCCTCAACAACAACATAACTTGGTTCCACCACAAACTCAAACTCAAACTCAACAAGTGAAGAAAAAAAGAAACCTTCCTGGTAACCCAGACCCTGATGCTGAGGTTATAGCTTTGTCTCCAAAGAGTCTACTAGCAAAAAACAGGTTCATATGTGAGATCTGCAACAAAGGTTTTCAAAGAGATCAAAATCTTCAACTTCATAGAAGAGGACATAATTTACCATGGAAGTTGAAGCAGAGAACAAGTAAAGAAATAAGGAAGAAAGTTTATGTATGTCCAGAAGTAAGTTGTGTGCATAATGATCCATCAAGGGCTTTAGGGGACTTAACTGGAATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCATTCAAAAACATGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGAAGAGACAGTTTCATAACACACAGAGCTTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGAGCTATGACAAacaacacaaacccaattttaccctcacaatcacaatcacaatcacaacaacaaccacCTTCATCATCCTCTCATCACATGATGATAAATCTCCAAACCCAATTCAATCCTCAACAACAACAAGACCTTCAAATTTTCCCATTAAAAAAAGAACAACAACAAAACCAAAGTTTCAATCTTTCTGCATCAGAATTATTACCACCTTGGCTTGGCCCAAataatcttgataatcatcatcatcatcaAATTTTCTCTCCAAGATTAGACCAAAATCAATTCTCACAAAACCCTAACCCTAGCAACATTGTTCCTCATCATGGTCCCACTTTCCCTCCTTATCATCAAACAGTTCCTTCCCCACATATGTCAGCTACTGCATTATTGCAGAAAGCAGCTCAGATGGGTGCAACCATTAGTAACAGAACATCTTCTTCTTCTTCACCATCCATCATTGGGACCCACCAACAACATGCTCATGATTCTCCAAACAATGTCACTGGTAATTTTGCTTTGAATTTATCTTCACATGAACACCAAAACACAACAACAAAACTGTCTTCTGTTTCCGGTGTTAATCAATATCTCAACATTCACGATCTTATGTTTTCTTCTTCATCGCCGTCTGGATTTGAAGCGACCCATTTCGATGAAATGTTTGGCGGCATTATGAATTCGAAGAAAGATCAAAACTTGCTTCAAGAAACACACTCTAAAACAACAACCTCCACGACCCATCATGTCGCAGCTGATAGTATCAGCTGCGACATCGGTGGAAACGAAGGATTGACAAGAGATTTTTTGGGTCTTAGGCCATTGTCTCATAGTGATATTCTAAGCATTGCTGGTATTGGAAATTGCATGAATGATCAACAACAAAGTCATGAATCTCAAAAGCCATGGTAA 1584 0.3681 MVKGLMFQQQQQVVDENMSNLTSASGEASASSGNRTEIGTSYPQQQHNLVPPQTQTQTQQVKKKRNLPGNPDPDAEVIALSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEVSCVHNDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAMTNNTNPILPSQSQSQSQQQPPSSSSHHMMINLQTQFNPQQQQDLQIFPLKKEQQQNQSFNLSASELLPPWLGPNNLDNHHHHQIFSPRLDQNQFSQNPNPSNIVPHHGPTFPPYHQTVPSPHMSATALLQKAAQMGATISNRTSSSSSPSIIGTHQQHAHDSPNNVTGNFALNLSSHEHQNTTTKLSSVSGVNQYLNIHDLMFSSSSPSGFEATHFDEMFGGIMNSKKDQNLLQETHSKTTTSTTHHVAADSISCDIGGNEGLTRDFLGLRPLSHSDILSIAGIGNCMNDQQQSHESQKPW 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03097 527 Gene3D Classic Zinc Finger 144 225 - -
Car07g03097 527 MobiDBLite consensus disorder prediction 366 387 - -
Car07g03097 527 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Car07g03097 527 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 20 512 - -
Car07g03097 527 Gene3D Classic Zinc Finger 71 139 - -
Car07g03097 527 MobiDBLite consensus disorder prediction 228 252 - -
Car07g03097 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 512 - -
Car07g03097 527 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Car07g03097 527 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Car07g03097 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Car07g03097 527 MobiDBLite consensus disorder prediction 20 65 - -
Car07g03097 527 SMART c2h2final6 167 187 IPR013087 -
Car07g03097 527 SMART c2h2final6 91 113 IPR013087 -
Car07g03097 527 SMART c2h2final6 132 162 IPR013087 -
Car07g03097 527 MobiDBLite consensus disorder prediction 20 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03097 Car-Chr7 58137663 58140939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03097 18 527 IDZ Gene Family AT3G13810 48.195 2.75e-143 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car07g03097 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03097 K25870 - qsu:111995117 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02703 01 52503885 52508252 Car07g03097 07 58137663 58140939 PCT