Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03080 ATGGAACCTCGAATTGGGAACAAGTTCCGTCTTGGTCGGAAAATTGGTAGTGGATCTTTTGGAGAGATCTATCTCGGAACCAATATTCAGACAAATGAAGAGGTTGGGATTAAGCTTGAAAATGTCAAAACCAAGCACCCTCAATTGTTGTATGAAGCAAAGCTGTATAAATTACTGCAAGGAGGAACTGGAATCCCGAATATAAAATGGTCCGGGGTCGAAGGAGAGTACAATGTCCTTGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTATTCAATTTCTGTAATAGGAAATTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAAATGATAAATCGAGTCGAATTTGTTCATTCCAAGTCATTTTTACATCGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTATATGTCATTGACTTTGGTCTTGCTAAGAAGTTCAGAGACAGCACTACACATCGGCATATTCCCTACAGAGAGAATAAGAATCTGACTGGAACTGCTAGGTATGCCAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGCAGGGATGATTTAGAGTCACTTGGATACGTTCTTATGTATTTTTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAGAATCAGTGAGATGAAAGTTTCTACTTCTATTGAGTCTCTTTGCCGTGGCTATCCCTCAGAATTTGCATCATACTTCCATTATTGTCGGTCACTGAGGTTTGATGATAAACCAGATTATGCTTATCTGAAAAGACTTTTGCGTGACCTTTTCATCCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAGTCTCAAATCGCCACTCCTCCTTCACGTACCATTGGTCTTGCTGCTGGACCAAGTTCTGGTCTACCACTAGCTTCTCCAAATGCTGATGGACAGTCAGGTGGAAAAGATGGTAGGCATACTGGGTGGTCTTCATCTGATCCCACTCGCAGGAGGAACTCTGGACCTATTGCCAATGATGGAACCTTATCTAGAGAAAAAGCACCACTTACAAATGACTTAACTGGATCTAAAGATGCTATGTTGTCAAGTTTGAAATTCTTTCGGTCAAGTGGATCTGCAAGGCGAGGTGCTATCTTAAGCAGCCGTGATGCAGTTGTTGGCAGTGAGACTGAGCCCTCTCGTCCTCTCACTCTGGATTCGAGTCAAGGAGCACTTCGTAAAAGCTCTGGTGCTCAGAGAAGTTCACCTATCATGTCATCTGAGCCCAACAGAGTATCATCTGGCAGAAACACATCATCAAACATAAAGAATTTGGATTCAACTCTTAGAGGTATTGAGAGTCTGCATTTTAATGATGAGAGGGCACAGTATTAG 1425 0.4225 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVGIKLENVKTKHPQLLYEAKLYKLLQGGTGIPNIKWSGVEGEYNVLVMDLLGPSLEDLFNFCNRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKFRDSTTHRHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEMKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQIATPPSRTIGLAAGPSSGLPLASPNADGQSGGKDGRHTGWSSSDPTRRRNSGPIANDGTLSREKAPLTNDLTGSKDAMLSSLKFFRSSGSARRGAILSSRDAVVGSETEPSRPLTLDSSQGALRKSSGAQRSSPIMSSEPNRVSSGRNTSSNIKNLDSTLRGIESLHFNDERAQY 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03080 474 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Car07g03080 474 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g03080 474 MobiDBLite consensus disorder prediction 399 455 - -
Car07g03080 474 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g03080 474 PANTHER CASEIN KINASE-RELATED 1 457 - -
Car07g03080 474 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Car07g03080 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Car07g03080 474 MobiDBLite consensus disorder prediction 410 455 - -
Car07g03080 474 MobiDBLite consensus disorder prediction 334 371 - -
Car07g03080 474 MobiDBLite consensus disorder prediction 306 371 - -
Car07g03080 474 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g03080 474 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 457 IPR030509 GO:0004672|GO:0005524
Car07g03080 474 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03080 Car-Chr7 57943073 57949024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03080 7 223 EF-hand Containing Proteins AT2G17890 24.889 9.48e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Car07g03080 Pkinase 8.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03080 K02218 - gmx:100778165 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02689 01 52405595 52410695 Car07g03080 07 57943073 57949024 PCT