Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03077 ATGGGGAATCAGAAGCTCAAATGGACACAGGAAGAAGAAGAAGCGCTTATTGCTGGAATTGAAAAGTACGGCGCTGGTAAATGGAAGAACATTCTCGTTGATCCTCAATTCGCACCTTTACTCACTTCTCGTTCCAACATCGACCTCAAGGATAAATGGCGGAATATGAATGTGAGTAATGGTACTCAAAGTTCTAGGGCACCCAAGCTCAAAGCTGCAGCTGCTCCTTCTTCTGATATTGTTATTGATGATTCTTCTCAAAATGACCAAGATGTTAAAAATCCTCCAAGGTATAATGCCATGGTTTTTGAAGCTCTATCTACATTAAAGGATACTAATGGTTCTGATCTAAATGCCATTGCTAATTTCATCGAGCAAAAGCATCAGGTTCCTCAAAATTTCAGAAGGGCACTGAGTTCAAGGTTGAGGACCCTTGTGAATCAAGGGAAGCTTGAAAAGGTACAAAATTGTTACAAGCTAAAAAAAGAAGCCTCAATGGAGACAAAACCACCTTCACCAAAACAAAAAGATGTCAAGCCGCAACGGCAATCATCCGTCTCTAATGATGTGCTGAAGGAAGCAGCTGATACTGCAGCATACAGAGTTGCTGATGCTGAACACAAATCATATCTGGCAGATGAGGCAGTCAAGGAGACTGAAAGACTCTCATGCCTAGCTGAACAAAATGATGCAATGTTGTTGCTAGCACAAAAACTTTATGAACAATGTTTGCGTGGTGAAACGATCAACTGGACTTAA 759 0.4111 MGNQKLKWTQEEEEALIAGIEKYGAGKWKNILVDPQFAPLLTSRSNIDLKDKWRNMNVSNGTQSSRAPKLKAAAAPSSDIVIDDSSQNDQDVKNPPRYNAMVFEALSTLKDTNGSDLNAIANFIEQKHQVPQNFRRALSSRLRTLVNQGKLEKVQNCYKLKKEASMETKPPSPKQKDVKPQRQSSVSNDVLKEAADTAAYRVADAEHKSYLADEAVKETERLSCLAEQNDAMLLLAQKLYEQCLRGETINWT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03077 252 MobiDBLite consensus disorder prediction 58 95 - -
Car07g03077 252 MobiDBLite consensus disorder prediction 162 189 - -
Car07g03077 252 SMART sant 4 59 IPR001005 -
Car07g03077 252 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Car07g03077 252 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 250 - -
Car07g03077 252 SUPERFAMILY Homeodomain-like 3 59 IPR009057 -
Car07g03077 252 Pfam linker histone H1 and H5 family 96 155 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car07g03077 252 Gene3D - 8 83 - -
Car07g03077 252 SUPERFAMILY "Winged helix" DNA-binding domain 94 174 IPR036390 -
Car07g03077 252 MobiDBLite consensus disorder prediction 80 94 - -
Car07g03077 252 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Car07g03077 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Car07g03077 252 Gene3D - 91 183 IPR036388 -
Car07g03077 252 CDD SANT_TRF 7 57 - -
Car07g03077 252 CDD H15 96 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car07g03077 252 SMART h15plus2 92 157 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car07g03077 252 MobiDBLite consensus disorder prediction 162 176 - -
Car07g03077 252 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 94 162 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car07g03077 252 PANTHER SINGLE MYB HISTONE 4 1 250 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03077 Car-Chr7 57909721 57914520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03077 1 249 Single Myb Histone (SMH) Gene Family AT1G72740 46.403 1.04e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car07g03077 Linker_histone 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03077 K09422 - gmx:778177 335.495