Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03063 ATGGACTCGCGCGCACAGTATAATCCTCGCACTGTTGAAGAGGTTTTCAGAGATTTCAAGGGTCGTCGTGCTGGTCTCATCAAAGCTCTCACAACTGATGTTGAAGATTTCTATAACCAATGTGATCCTGACAAGGAAAATCTGTGCTTATATGGCTTCCCTAGTGAGCAATGGGAAGTGAATTTACCTGCTGAAGAAGTTCCACCAGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGATTGGCTATCTTTAGTTGCTGTTCATAGCGATGCATGGTTGCTTGCTATTGCTTTCTACTTTGGAGCCAGATTTGGGTTTGACAAATCTGATAGGAAACGTCTTTTCAACATGATCAATGAACTGCCTTCAATATATGAAGTTGTTACCGGTGCAGCAAAGAAACAAGTTAAGGAGAAGTCTTCAGTCTCAAACCAAAGTGGCAGCAAATCCAAGTCTAGCTCGAAAGTGCAGCGTGCTCCAGAACCCCAGGTTAAGCAGCAGCCAAAGGCATTGCCACCACCTAAAgacgaggaagaagaactggacgaggaagatgaagatgaacacggagagACCTTATGCGGTGCATGCGGAGAGCATTATGGCACTGACGAATTCTGGATTTGCTGTGACATATGCGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACACCTGCTAGGGCTGAGCATATCAAGCACTACAAGTGTCCATCGTGCAGTAACAAAAGAGCTCGCCCTTGA 771 0.4267 MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPDKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKSDRKRLFNMINELPSIYEVVTGAAKKQVKEKSSVSNQSGSKSKSSSKVQRAPEPQVKQQPKALPPPKDEEEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNKRARP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03063 256 MobiDBLite consensus disorder prediction 146 195 - -
Car07g03063 256 Pfam PHD-finger 203 252 IPR019787 -
Car07g03063 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Car07g03063 256 CDD PHD_AL_plant 202 252 IPR044104 -
Car07g03063 256 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Car07g03063 256 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 256 - -
Car07g03063 256 SUPERFAMILY FYVE/PHD zinc finger 192 253 IPR011011 -
Car07g03063 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Car07g03063 256 SMART PHD_3 202 250 IPR001965 -
Car07g03063 256 PANTHER CPG BINDING PROTEIN 6 256 IPR045104 GO:0006355|GO:0042393
Car07g03063 256 MobiDBLite consensus disorder prediction 146 170 - -
Car07g03063 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03063 Car-Chr7 57647116 57650898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03063 5 255 Alfin-like Transcription Factor Family AT3G42790 73.307 4.99e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Car07g03063 Alfin 1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03063 - - gmx:100170700 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03063 07 57647116 57650898 Car01g01226 01 15083896 15087581 ECH
Car01g01226 01 15083896 15087581 Car07g03063 07 57647116 57650898 ECH
Car07g03063 07 57647116 57650898 Car07g03063 07 57647116 57650898 ECH
Car01g02680 01 52336769 52341250 Car07g03063 07 57647116 57650898 PCT