Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03062 ATGCATATATTCTGGACTTCTTCTGAATCTGATGTGCAACAATCATCGATGTCCGAAAATCTGACCTTGAAAATGAGTGTTTTGCCACAACAATGCCATAAGACTAAGCCACTAGGCTTTCAATTTCAAGACCAAGATTCTTCTTCAACTCAATCGACCGGTCAATCTTATTTGGAAGTCGGTTCGGGACAATCAGGTCCAATTTCTGTCCAATATACCAATTCTTCTGCTTGTTCAACACTTAGCAAAACTGGCGGAAAGAGCGTGCAAGGTATCATAAGATCAACTGCAGGGAGTCAAGATTTTTCTTTCCCTCCTTCTCAACTGGATCACAACCAATCACTCGCTCATGTGGCATTCCCTCATGCTGAGACATGCTTTAGTGGCTTACTAGCGGCTCCGTATGGACCGCAGAATAATGTTCATCATGCTCAGCTTGTAGGAATGGCTCCGGTTCGAATTCCTTTGCCTCTTGATCTTTGTGAGGAACCGATATATGTGAATGCAAAGCAGTACCATGCTATTATGAGACGTAGACAGTATCGTGCAAAGCTCGAAGCACAGAACAAACTCATCAAAAATCGGAAACCATATCTACACGAGTCGCGCCATCTACATGCATTGAAGAGAGCTAGAGGTTCCGGTGGACGTTTTCTAAATACGAAAAAGCTCCAAGACCATGGCCTTAATGTTTCTAGCTCTACTCAGTTGAATCTGAGCGAAAATGTGGCGGGATCCAAGGTACATCAAGTAGAAAACTTTAGAGATGGTGCTTCCACAACCGCATGTTCTGATGTCACAAGCACTTCTAATAGTGATGACATGTTCCAACAACATGAATCAGACTTCAGATCATGTGGTTACCCTTCTCATATGCAGGGTTTCTCAGCCGATGTTGGTGGTGGTGGTCGGAATCAACACCATCTATCGGTCCTTATGTGA 942 0.4363 MHIFWTSSESDVQQSSMSENLTLKMSVLPQQCHKTKPLGFQFQDQDSSSTQSTGQSYLEVGSGQSGPISVQYTNSSACSTLSKTGGKSVQGIIRSTAGSQDFSFPPSQLDHNQSLAHVAFPHAETCFSGLLAAPYGPQNNVHHAQLVGMAPVRIPLPLDLCEEPIYVNAKQYHAIMRRRQYRAKLEAQNKLIKNRKPYLHESRHLHALKRARGSGGRFLNTKKLQDHGLNVSSSTQLNLSENVAGSKVHQVENFRDGASTTACSDVTSTSNSDDMFQQHESDFRSCGYPSHMQGFSADVGGGGRNQHHLSVLM 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03062 313 ProSiteProfiles NF-YA/HAP2 family profile. 161 221 IPR001289 GO:0003700|GO:0006355
Car07g03062 313 MobiDBLite consensus disorder prediction 40 62 - -
Car07g03062 313 ProSitePatterns NF-YA/HAP2 subunit signature. 166 186 IPR018362 GO:0003677|GO:0016602
Car07g03062 313 SMART cbf3 160 221 IPR001289 GO:0003700|GO:0006355
Car07g03062 313 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 218 IPR001289 GO:0003700|GO:0006355
Car07g03062 313 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 5 287 IPR001289 GO:0003700|GO:0006355
Car07g03062 313 PRINTS CCAAT-binding transcription factor subunit B signature 164 186 IPR001289 GO:0003700|GO:0006355
Car07g03062 313 PRINTS CCAAT-binding transcription factor subunit B signature 195 218 IPR001289 GO:0003700|GO:0006355
Car07g03062 313 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 5 287 - -
Car07g03062 313 Gene3D - 161 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03062 Car-Chr7 57639201 57644235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03062 5 313 CCAAT-HAP2 Transcription Factor Family AT3G14020 43.925 3.44e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Car07g03062 CBFB_NFYA 6.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03062 K08064 - gmx:100500765 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03062 07 57639201 57644235 Car07g03062 07 57639201 57644235 ECH
Car01g02679 01 52331328 52335503 Car07g03062 07 57639201 57644235 PCT