Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03054 ATGTATATCCTCCCTGGGATTCTAATCATTGGAGCATTAGTAATTGCTTTAGCATTATTCAGTATCACAATGCTAGGATGGTGCAAGTTTATAAATCATGCAACAACACTTCCAACAACAGGCATATCTTATGATGACAAATTATCTGCTTGCATGAGTTTAGAGTCACATTCAATCACATTCATGTACAAGGAAGCTGACCATGCTGCACAAGGCATAATGAACCAGACTGAATGTGTTATCTGCTTAACAGTCTTTCAAGAAGACGAAAGTGTTCGGAAGCTTCATACGTGCAAGCACGTGTTTCATACATCTTGCATCGATAAATGGCTCGGCTCTCGTTCTGGATGTCCATTGTGTCGCTCTCAAATTGACCGAGTAACTTCGCCAAATGTGACATTGGCAAATGAGCAGATTATTGTGGATATGGGTGACTCCATAATTTGA 447 0.4004 MYILPGILIIGALVIALALFSITMLGWCKFINHATTLPTTGISYDDKLSACMSLESHSITFMYKEADHAAQGIMNQTECVICLTVFQEDESVRKLHTCKHVFHTSCIDKWLGSRSGCPLCRSQIDRVTSPNVTLANEQIIVDMGDSII 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03054 148 Pfam Ring finger domain 78 121 IPR001841 -
Car07g03054 148 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 47 134 IPR044675 -
Car07g03054 148 CDD RING-H2_EL5_like 78 121 - -
Car07g03054 148 SUPERFAMILY RING/U-box 73 127 - -
Car07g03054 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 129 IPR013083 -
Car07g03054 148 ProSiteProfiles Zinc finger RING-type profile. 79 121 IPR001841 -
Car07g03054 148 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 47 134 - -
Car07g03054 148 SMART ring_2 79 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03054 Car-Chr7 57549778 57550828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03054 61 142 C3H Transcription Factor Family AT3G03550 44.706 2.44e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03054 - - gmx:102661636 184.882