LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g03046	ATGTTGTTCTTCTCAAGTTTCTCCAAACAAACAGTACTACGTTTATTTTTTGTTTGTCTTTTGTTTATGTCAAGTTTGAAGGTTGAAACGGTCAACACAACAACATTAGACCCAAAAAAATCCTATCCATTAATATCTCAATCTAATGTTCCCCAAATTCATaagtacgaagtttttgttagctttaggggtccagatatccgtgaagtttttcttggtcatttagttaaagaatttaatcaaaagaaaatcgttgccttcatagatgagaaacttaaacaaggagatgaaatagggcaatcactttttgaagcaattgaaacatctttgatttctgtagtcatattctctccgaactatgcttcttcggagtggtgtttggatgaacttgtgaaaattattgagtgtagagagaaagatggacagattgtgttgcctgttttctacaaagtggaccccacaaatgtaaggcatcaagatggagtttatgcagatgcatttgatgaacatgaaacaaagcatGGTAATGCTAGCAATAATGTCCTTGGTTGGAGATATGCTTTGAAGAAATCTGGAAATATCGCAGGTTTTCATTCATTAAAATTTTGGAATGATGCAGAGCTTGTAGAAAAAATAGTTGATTATGTGTTGAGGAGGTTGGGTCAAGTGCGTTCAGTGAATTCACAAAAACTTATAggaattgaaaaacatatttcaaaggtggaatcattgttacaagtacactcacgagatgttagagctattggaatatgggggatgggtggtattggcaaaacaacaattgcacaagaagtatatagcagactttgttctgaatatgaaggttgttactttaaggctaatgtaagagaagtttgtggaagagttgttgatattatttctttaaagaaagatcttttttcaacacttttagatgaaaacaactctaaaattgacattccatatggtttgcactattctgttgagagaaggattcgtagaatgaaggttcttgttgttcttgatgatatcagttctccacaacaacttgaaattttaattggatcacttgatttgtttggacctggaagtagaatcatcttaactactagaaataaacaagtacttgccaattgggttgttgaaaaagatatctacaaggttaaaccattggattttgatgactcttttcgtcttttcactttgaatgcatttggaaataaagatcttcaaaaagattatcatgatttgtccaagaaggtggtcaagtatgctcaaggaattccaattgttcttcatgttttggctcatcatcttaagggaaaagataaaaaaatatgggaaggtcagttACAAAGTCTTACTAAAAAACCAATTCCAGAAGTTCATGATGTTGTTAGATTGAGTTATAGTGATCTTGATCGTGATGAGAAGAATGTACTTTTGGACATTGCTTTCTTTTTTGATGGATTGCATCTCAAAGTTAACCAAATCAAGTCACTGGTGAAAGCTCATGGTTATTCAGTGGATGTGGAGTTGGAAAATCTGAAAAATAAAGCTCTTATAACTATTTCTCCTGATAATGTTGTATCCATGCATAGCATTATACAAGAAACAGCTTGGGAAATTGTTCGTGAAGAATCTTTTGACAATCCTGGAATTCGAAGTCGATTACTGAATCCTGACGACATTTATAAAGTACTAAACAATGATAAGGGGAGTGAGACGATTAGAAGCATAGCTATTGACTTGACGACTATTAAGAAGATGCAGATAAACCCTCATGTGTTTGATAAGATGAAGAAACTACAATATCTAGATATATATAGTAAAGGATATTGTTGTGTGTTTCTTCAAAATCGTCAAAGCTTCTATCTTCCTCAAGGGCTTGAATCATTGCCAAATGAACTAAGATATCTTAGGTGGGCACATTACCCTTTGGAGTCCTTACCATCTAAGTTTAATGGAGAGAAACTTGTTGTGTTGAACTTGCAGTACAGCCAAGTGAAAAAACTTTGGTATAAACAGAAGGATCTTAAGAATTTAAAGTATCTTATACTCAGTTTATCCTCACATCTATTGGAGCTTCCAGATTTGTCAAAGGCTACAAATCTAGCAGTAATTGATCTTCGTCTATGTACAGGGTTAACTAGTGTACATCCATCAGTGTTTTCTCTTAACAAGCTTGACAAACTGGATCTAGGAGGATGTTTTTCTCTAACAAGCCTCAGAACCAACATTCGTTTAACCTCCCTTCGTTATCTATCACTTGCAGGTTGCATTGCACTCAATGATTTCTCAGTTATCTCAACTAATATGATAAAGTTGAATTTAGAACATACTGGTATTAAACAACTACCCTCCTCAATTGGACTTCAAACAAAACTTGAAAAGTTGCTTCTTGCACACAGTTACATTAAGAAACTACCTCAAAGCATCAAACATTTGTCAAGACTGCAACATCTTGACGTGCATCATTGCAGAGAACTTCAAAGTATACCAGAGCTCCCTTCATCGCTAAAAACACTAGATGCAAGTGGTTGTGTATCATTAGAGACTGTAATTTTCCCTTCAACTGCTATTGAACAACAGAAGGAAAACAAGACAAAAGTTACTTTCTGGAATTGCCTGAAACTTGATCAAGATTCTCTTAAGGCAATAGAGTTGAATGCACAAATTAACATGATGAATTTTGCATACAACCACCACATAGCCACATCTGGAGATCAAGATTATGATGGTAAAGGTAAAGGAACATATGTATATCCAGGAAGTAGTGTACCAGAATGGTTGGTATACAAAACAACACGTGATTACATGACTATTGATCTAACTTTTGTGAACCATACAACTCCATTGGCCTTCATTTTTTGCTTCATTGTTCCACAAGTTGAATCACATGGTTTCAATTTGATATTTAATATTAGTGCTGGTGAAGGTGAAAGTTACCAAGTTTCTTTGGATAGACCAAGTATTGGAATTAAATCTGATCATGTGTATCTAACGTGTGACAGAGGTTTGTCTAACTATCTAAATAGTAGACTCAAACATTTGTCAAAGTTGGACATTAAGGTTACTGCAGTATCACAAACACCAACGAATGGCCAAGTATCATTGATGTTGTTGAAAGGGGTTGGGATCAGCCCAATAAACTTCTCACAATATCTCAGTTTCATTCAACAGATCAAAATGCCTCAAGGTTCAACTATCCCAGTTTCTACATGGAGTGAT	3231	0.2426	MLFFSSFSKQTVLRLFFVCLLFMSSLKVETVNTTTLDPKKSYPLISQSNVPQIHKYEVFVSFRGPDIREVFLGHLVKEFNQKKIVAFIDEKLKQGDEIGQSLFEAIETSLISVVIFSPNYASSEWCLDELVKIIECREKDGQIVLPVFYKVDPTNVRHQDGVYADAFDEHETKHGNASNNVLGWRYALKKSGNIAGFHSLKFWNDAELVEKIVDYVLRRLGQVRSVNSQKLIGIEKHISKVESLLQVHSRDVRAIGIWGMGGIGKTTIAQEVYSRLCSEYEGCYFKANVREVCGRVVDIISLKKDLFSTLLDENNSKIDIPYGLHYSVERRIRRMKVLVVLDDISSPQQLEILIGSLDLFGPGSRIILTTRNKQVLANWVVEKDIYKVKPLDFDDSFRLFTLNAFGNKDLQKDYHDLSKKVVKYAQGIPIVLHVLAHHLKGKDKKIWEGQLQSLTKKPIPEVHDVVRLSYSDLDRDEKNVLLDIAFFFDGLHLKVNQIKSLVKAHGYSVDVELENLKNKALITISPDNVVSMHSIIQETAWEIVREESFDNPGIRSRLLNPDDIYKVLNNDKGSETIRSIAIDLTTIKKMQINPHVFDKMKKLQYLDIYSKGYCCVFLQNRQSFYLPQGLESLPNELRYLRWAHYPLESLPSKFNGEKLVVLNLQYSQVKKLWYKQKDLKNLKYLILSLSSHLLELPDLSKATNLAVIDLRLCTGLTSVHPSVFSLNKLDKLDLGGCFSLTSLRTNIRLTSLRYLSLAGCIALNDFSVISTNMIKLNLEHTGIKQLPSSIGLQTKLEKLLLAHSYIKKLPQSIKHLSRLQHLDVHHCRELQSIPELPSSLKTLDASGCVSLETVIFPSTAIEQQKENKTKVTFWNCLKLDQDSLKAIELNAQINMMNFAYNHHIATSGDQDYDGKGKGTYVYPGSSVPEWLVYKTTRDYMTIDLTFVNHTTPLAFIFCFIVPQVESHGFNLIFNISAGEGESYQVSLDRPSIGIKSDHVYLTCDRGLSNYLNSRLKHLSKLDIKVTAVSQTPTNGQVSLMLLKGVGISPINFSQYLSFIQQIKMPQGSTIPVSTWSD	1077

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g03046	1077	ProSiteProfiles	TIR domain profile.	54	220	IPR000157	GO:0007165
	Car07g03046	1077	SUPERFAMILY	L domain-like	582	879	-	-
	Car07g03046	1077	PRINTS	Disease resistance protein signature	425	439	-	-
	Car07g03046	1077	PRINTS	Disease resistance protein signature	331	345	-	-
	Car07g03046	1077	PRINTS	Disease resistance protein signature	814	830	-	-
	Car07g03046	1077	PRINTS	Disease resistance protein signature	254	269	-	-
	Car07g03046	1077	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	42	1066	IPR044974	GO:0006952
	Car07g03046	1077	Gene3D	-	391	474	IPR042197	-
	Car07g03046	1077	Gene3D	Ribonuclease Inhibitor	564	737	IPR032675	-
	Car07g03046	1077	Gene3D	-	53	223	IPR035897	-
	Car07g03046	1077	SUPERFAMILY	Toll/Interleukin receptor TIR domain	50	197	IPR035897	-
	Car07g03046	1077	Gene3D	Ribonuclease Inhibitor	748	887	IPR032675	-
	Car07g03046	1077	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	225	484	IPR027417	-
	Car07g03046	1077	SMART	till_3	55	194	IPR000157	GO:0007165
	Car07g03046	1077	Gene3D	-	224	388	IPR027417	-
	Car07g03046	1077	Pfam	NB-ARC domain	235	460	IPR002182	GO:0043531
	Car07g03046	1077	Pfam	TIR domain	55	226	IPR000157	GO:0007165
	Car07g03046	1077	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	42	1066	-	-
	Car07g03046	1077	SUPERFAMILY	"Winged helix" DNA-binding domain	461	568	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g03046	Car-Chr7	57314907	57320152	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car07g03046	42	843	WRKY Transcription Factor Family	AT4G12020	34.398	3.57e-113	385

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g03046	-		-	cam:101503346	2128.6