Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03000 ATGCAGAATCACAGGCTCAAGCAGCAGCAGCAGCAACAACAACAAGCTCTGATGCAACAAGCTCTTCTTCAACAACAGTCTCTCTACCACCCTGGTCTCCTAGCTCCACCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGCAACATCCATACACAGGTAACAGAGCCACTTCTGCAAGAAGTTTTTGCAGGTACTGGCCCAGTCGAAGGGTGTAAACTATTTAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGTAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGTCAACCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTCGTTGGCGACCTCAGTCCTGAGGTTACAGATGCTACACTTTTCGCATGCTTTTCTGTCTATGGAAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTCGGGTTTGTTTCATTTCGTAGTCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACCGGAAAGTGGCTTGGAAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCCGGCGGCATTGAAGAGAAGCAAAACTCAGACAACAAAAGTGTGGTGGAACTAACAAATGGTTCATCTGAGGACGGTAAAGAGACATCCAACGGTGATGCTCCTGAGAACAATCCTCAATATACAACTGTTTATGTGGGTAACCTTGGTTCAGAGGTAACACAGCTTGATCTCCATCGCCATTTCTATTCCCTCGGGGCTGGTGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGCTTTGGTTTTGTGAGATTCAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCTCAGTCTCATCTCTGTGGTAAACAAATTAAGTGCTCTTGGGGGAGCAAGGCCACTCCACCCGGAACTGCTTCAAATCCACTTCCCCCACCTTCTGCTGCATCTCTGCCAGGCCTGTCTGCTACTGATATTTTAGCGTATGAGCGGCAGCTAGCAATGAGCAAGATGGGCGGCGTTCATGCTGCGTTGATGCATCCACAAGCGCAACATCCTCTTAAGCAGGCTGCAATTGGAGCAAGCCAGGCGATTTATGATGGCGGGTTCCAGAATGTTGCTGCTGCACAGCAAATGATGTACTATCAGTAA 1269 0.4712 MQNHRLKQQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYGSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDNKSVVELTNGSSEDGKETSNGDAPENNPQYTTVYVGNLGSEVTQLDLHRHFYSLGAGVIEEVRVQRDKGFGFVRFSTHAEAALAIQMGNAQSHLCGKQIKCSWGSKATPPGTASNPLPPPSAASLPGLSATDILAYERQLAMSKMGGVHAALMHPQAQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03000 422 CDD RRM3_TIA1_like 263 338 - -
Car07g03000 422 SMART rrm2_1 143 216 IPR003954 GO:0003676
Car07g03000 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 403 - -
Car07g03000 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 131 IPR000504 GO:0003723
Car07g03000 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 338 IPR000504 GO:0003723
Car07g03000 422 MobiDBLite consensus disorder prediction 226 262 - -
Car07g03000 422 Gene3D - 240 342 IPR012677 -
Car07g03000 422 Gene3D - 141 221 IPR012677 -
Car07g03000 422 SMART rrm1_1 58 127 IPR000504 GO:0003723
Car07g03000 422 SMART rrm1_1 264 334 IPR000504 GO:0003723
Car07g03000 422 SMART rrm1_1 143 216 IPR000504 GO:0003723
Car07g03000 422 SUPERFAMILY RNA-binding domain, RBD 136 230 IPR035979 GO:0003676
Car07g03000 422 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 8 403 - -
Car07g03000 422 SUPERFAMILY RNA-binding domain, RBD 41 135 IPR035979 GO:0003676
Car07g03000 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 214 IPR000504 GO:0003723
Car07g03000 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 125 IPR000504 GO:0003723
Car07g03000 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 322 IPR000504 GO:0003723
Car07g03000 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Car07g03000 422 CDD RRM1_TIA1_like 59 129 - -
Car07g03000 422 CDD RRM2_PUB1 143 217 - -
Car07g03000 422 Gene3D - 1 140 IPR012677 -
Car07g03000 422 SUPERFAMILY RNA-binding domain, RBD 254 344 IPR035979 GO:0003676
Car07g03000 422 Coils Coil 6 26 - -
Car07g03000 422 MobiDBLite consensus disorder prediction 224 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03000 Car-Chr7 56697303 56702435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03000 52 331 Eukaryotic Initiation Factors Gene Family AT1G22760 26.780 9.10e-18 84.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03000 07 56697303 56702435 Car07g03000 07 56697303 56702435 ECH