Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02977 ATGTGTGGTGGTGCTATTATCTCCGATTTCATTCCGGCTGCTGCGGCGGTGGGAGGCTCCCGGCGTGTTACTGCTGATATCTTGTGGCCGAATTTGAGGAAACAAGGTTCGAGGAAACCGTTTTTGTTGGACGATGATTTCGAGGCTGGTTTTAGAGAGTTTAAGgatgattctgatttcgatgaagacgaggaagatgatgatgatgatgaAGGCTTGTTGGTCGGTGGTAAAGGATTTACCTTTTCTTCAAACAACACCAAGTCTTTCAAAACTTTCTCTCGTGGATCAACTGCTGCAAAATCCGTGTCACCGAAATCAAATGAGCAAGCTGAAAAGGAATGTAAGAGAAAGAGGAAGAATCAATATAGGGGTATCCGCCAACGTCCATGGGGAAAATGGGCAGCTGAGATCCGCGACCCAAGGAAGGGAGTTCGTGTCTGGCTTGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTACGATGCTGAAGCTAGAAGAATCCGTGGCAAGAAAGCCAAGGTGAATTTTCCCGAGGAAGCTCCAGTTACTTCCTCAAAACGATTCAAGCCAAATGTCGAGAATAAGCTGGTGAATAAAAATCTGAACTCTTTCAAGCCTAATGGGAACAGAATGTTCAACTTCGGCGAAAATGTGGAGAACTACTATTCTCCTATGGATCAGGTGGAACAGAAACCACTGGTGAACAATAACAACCAGTATGCCAACATGGGACCGTTCTCGGGAAACGGTGTTCAGCACTCACAGATTTCTCCATCTGCTGATGTTACCGCTTACTTCAGTTCAGAACATTCGAGCAATTCGTTTGATTATTCTGATCTTGGTTGGGGCGAACAAGGCCCGAAAACTCCCGAGATTTCATCCATGCTTTCTGCTGCTGCTCCTCTCGAAAGCGAATCTCAGTATGTGCAGAACAATATGCAGTCTAACAACAATCAGAATATGCTACCTGTGCAAGATAATTCTGCAAAGACACTCTCTGAGGAGCTTGCAGATATCGAATCCCAGCTGAAGTTCTTCGAAACCCCTTATGATGACAACTGGGGTGACGCATCATTGGCATCTTTCCTCGGTGGAGATGCAACTCAAGACGGTGGAAACCCGATGAACCTTTGGAGTTTTGATGACTTGCCTTCCATTTCCGGCGGTGTTTTCTGA 1182 0.4425 MCGGAIISDFIPAAAAVGGSRRVTADILWPNLRKQGSRKPFLLDDDFEAGFREFKDDSDFDEDEEDDDDDEGLLVGGKGFTFSSNNTKSFKTFSRGSTAAKSVSPKSNEQAEKECKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPVTSSKRFKPNVENKLVNKNLNSFKPNGNRMFNFGENVENYYSPMDQVEQKPLVNNNNQYANMGPFSGNGVQHSQISPSADVTAYFSSEHSSNSFDYSDLGWGEQGPKTPEISSMLSAAAPLESESQYVQNNMQSNNNQNMLPVQDNSAKTLSEELADIESQLKFFETPYDDNWGDASLASFLGGDATQDGGNPMNLWSFDDLPSISGGVF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02977 393 CDD AP2 122 180 IPR001471 GO:0003700|GO:0006355
Car07g02977 393 MobiDBLite consensus disorder prediction 94 122 - -
Car07g02977 393 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Car07g02977 393 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Car07g02977 393 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Car07g02977 393 Gene3D AP2/ERF domain 121 180 IPR036955 GO:0003700|GO:0006355
Car07g02977 393 PANTHER EREBP TRANSCRIPTION FACTOR 1 387 - -
Car07g02977 393 SUPERFAMILY DNA-binding domain 122 180 IPR016177 GO:0003677
Car07g02977 393 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Car07g02977 393 PANTHER DNA-BINDING DOMAIN 1 387 IPR044808 GO:0003700|GO:0009873
Car07g02977 393 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02977 Car-Chr7 56389868 56393206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02977 1 393 AP2-EREBP Transcription Factor Family AT1G53910 45.278 1.31e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car07g02977 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02977 K09286 - gmx:100818646 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02977 07 56389868 56393206 Car07g02977 07 56389868 56393206 ECH