Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02974 ATGGTTTCTTCAAATGGAAACAACACATCAACAAAATCCAGCAAGAGAAAAATTGACATCAAGAAAATAGAACAATCAAACAAGTTACAAGTGAGCTTCTCAAAACGCAAATTAGGGCTTTTCAACAAAGTCACCGAATTATCCATCCTGTGTCAGGCAAAAACTGCAATGATCATCACTTCACCAAACGAAAAACTCTATGCATGTGGTTATCCAAACCCTGACTCCGTCATTAATCAATTTATCACTCAAGAAAACAACGTTGTTATCGACAACGAAAAAAAAAAACAAGATGAGGAAATATTTGAAACACTAAGGTTTCAATACGAGGAACTTCAAGAAAAGTTGAAAGAAGAGACGAATAATTTATTGAAAGAGAGAAATAAAGGTGATGCATGTTCTACTTCTTGGTGGGATCGTTCTATTGATGATATGTCTGTGGAATCTCTTGAACAATTTAAGAATTCTTTAGAAAATTTGAAGCTTAATATAGTTACAGCTTTAGAAGAAAAAAGGGTTAATTCGATCTATTCAACTCAACCACATCAAGAACGTATCAAGCTATTAAAATCTTGA 576 0.3316 MVSSNGNNTSTKSSKRKIDIKKIEQSNKLQVSFSKRKLGLFNKVTELSILCQAKTAMIITSPNEKLYACGYPNPDSVINQFITQENNVVIDNEKKKQDEEIFETLRFQYEELQEKLKEETNNLLKERNKGDACSTSWWDRSIDDMSVESLEQFKNSLENLKLNIVTALEEKRVNSIYSTQPHQERIKLLKS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02974 191 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Car07g02974 191 Coils Coil 150 170 - -
Car07g02974 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 68 IPR002100 GO:0003677|GO:0046983
Car07g02974 191 Gene3D - 25 110 IPR036879 GO:0003677|GO:0046983
Car07g02974 191 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Car07g02974 191 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Car07g02974 191 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Car07g02974 191 PANTHER MADS BOX PROTEIN 7 176 - -
Car07g02974 191 Coils Coil 95 129 - -
Car07g02974 191 CDD MADS 15 67 - -
Car07g02974 191 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 7 176 - -
Car07g02974 191 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Car07g02974 191 SUPERFAMILY SRF-like 14 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02974 Car-Chr7 56317776 56318351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02974 14 161 Type I MADS-box Gene Family AT5G60440 34.940 5.54e-25 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car07g02974 SRF-TF 3.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02974 - - cam:101507050 166.007