Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02973 ATGGTTTCTTCAAATGGAAACAGCACAACAACAAAACCCAAGAGAAAAATTGACATCAAGAAAATAGAACAATTGAACAAGTTACAAGTGAGCTTCTCAAAACGTAAATTAAGACTCTTCAACAAAGTTACCGAACTATCCATTATGTGTCAGGCAAAAACCGCAATGATCATCACTTCACCAAACGAAAAACTCTATGCATGTGGTTATCCAAATTCTGACTCCGTCATTAACCAATTTATCGCTTCGGAAAACAACGTTGTTATCGACAACGAAAAAAAAAAACAAGATGAGGAAATATTTGAAACACTAAGGTTTCAATACGAGGAACTTCAAGAAAAGTTGAAAGAAGAGAAGAATATTTTATTAAAAGAGAGAAATAAAGGTGATGCATGTTTTACTTCTTGGTGGAATCATTCTATTGATGATATGTCTTTTGAATCTCTTGAAAAATTTAAGAACTCTTTAGAAAATTTGAAGCTTAATATAGTTACAGCTTTAGAAGAAAAAAGAGTTAACTCGATCTATTCAACTCAACCACACCAAGAACGTATCAAGCTATTAAAATCTTGA 573 0.3194 MVSSNGNSTTTKPKRKIDIKKIEQLNKLQVSFSKRKLRLFNKVTELSIMCQAKTAMIITSPNEKLYACGYPNSDSVINQFIASENNVVIDNEKKKQDEEIFETLRFQYEELQEKLKEEKNILLKERNKGDACFTSWWNHSIDDMSFESLEKFKNSLENLKLNIVTALEEKRVNSIYSTQPHQERIKLLKS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02973 190 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Car07g02973 190 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Car07g02973 190 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Car07g02973 190 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Car07g02973 190 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 12 175 - -
Car07g02973 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 67 IPR002100 GO:0003677|GO:0046983
Car07g02973 190 PANTHER MADS BOX PROTEIN 12 175 - -
Car07g02973 190 Gene3D - 25 109 IPR036879 GO:0003677|GO:0046983
Car07g02973 190 Coils Coil 149 169 - -
Car07g02973 190 SUPERFAMILY SRF-like 13 82 IPR036879 GO:0003677|GO:0046983
Car07g02973 190 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Car07g02973 190 Coils Coil 94 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02973 Car-Chr7 56307560 56308132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02973 11 160 Type I MADS-box Gene Family AT5G60440 33.962 1.08e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car07g02973 SRF-TF 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02973 - - cam:101507050 169.474