Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02972 ATGTTGCAGTTTCATCCTCAAGGTTCTTCTAAACAAACTTGTACTCTTCTCACTGTTACTTCTGCAACACGTTGTGCTGAGCAGAAGCATCCACAGAATCATCACAACTTCCCTTTTCCTGAGTTGGTTTCTTCAGGGCGTCTTGAGGTTCAAACTCTATGCAATCCGGAAAAGGAACAGTTTTGTAAAGTTCTTGAATCGTATCAGCCGAGTATTGTTTACTTACAAGGAGAGCAGTTAGTGAATGAGGAAGTTGGTTCAGTGGTTTGGCAAGGTGTGGAATTATCCACCCCTGAAGATATATCAGAGCTCTTCGGTACCAGTTTGCCGACTGCGGTTTACTTAGAAATCCCAAATGGAGAAAGTTTTGCAGAGGCCCTTCATCTTAAGGGAATCCCATATGTTGTATTTTGGAAGAATGCCTTTTCTCGATATGCTGCCTGCCATTTTCGTCAAGCATTTTTTTCAGTGGTGCAGAGCTCATCTACACATACATGGGATGCTTTCCACCTTGCACATGCCTCTTTCGAACTTTACTGTGTTCAAAATAATCAAGTACTTCCTACTGATAGCAATGATGCTGATAGTGATATGGGGCCACACCTTCTTGGTGACTGTCTCAAAATCCATATTGACCCTCCAGAGATGGGtgaagaagaagaagatgatgacgatgatgaAAGTTCCTCAGGCAGTCTTCCTTCTATACAAATACATGACGATGAAGTGAACTTGAGATTTCTAATCTGTGGTGAACCTTCCACAGTTGATGAATCATTGCTAAGATCTTTGGAGGATGGACTCAGAGCTCTTTTAACTATTGAAATACGTGGTTGCAAGCTCCATGGCAAGTATAGTGCCCCTCCACCACCTCTTCAGGCAGCTGCTTTTTCTCGCGGAGTTGTGACCATGCGATGTGATATATCAACCTGCAGTTCTGCACATATCTCACTTCTAGTGTCTGGCAGTGCACAAGCCTGTTTTAATGATCAGCTCTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGGGTCAAATAGTTCATGCACAACTCAGCGAAGCAAACAAACAGACTATCTCTGAACCTCGTAGATCTGCTTCAATAGCATGTGGAGCAACTATTTTTGAAATTAGCATGAAGCTTCCCCAATGGGCTTTGCAGATTTTGAGACAACTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAAGGGTTGCCTGTAGCTTCTTTTGAGAAAGATGACGCTGAGCGCTTACTTTTCTTCTATCAAAGCTCTGAGAAAGATGGCTGTGCAAACCACAACATAGTTTTCAGCAGGCCCCCCATTTGGTTGAAACCTCCCCCTCCAACAAGAAAGAGGAGTGAATCCAGCCAAGGGGCTAGTCCTGACATAGATGATGGTGTCTTTTCAGGGCAGGGTGCTATTAAAAAAGTAGATGAAGAGGAAAAGGATAGGAAAATGGTGAATGGGATTAGCACACCATTAACTCCAGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCAGGTCCGTCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGATGGATGGTTTTGGTGGTGCCCATGTTGAGGCTAGTGTGCCACTTGTCCCTATGAAGCGTAGTAGTATCGCATCATCATCTGCAACACAGAGAAAATCATTTTCGAGCTCAGCTCTGTCTAAGCAAGTTATTTCATTGAATCCATTGCCGTTGAAAAAACACGGTTGTAGCAGAGGCCCAGTACAGACTTGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGGCATAGCCGGCTGATTCCCCAAGGAGGGCTTTCTGAGTTCCCTGACGCCATTCTGAATGGAAAACGCCTTGATCTCTACAACTTATATAAAGAGGTGGTTACAAGAGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAGATGGGCAATTACACATCAACAAATAGAATGACTGGAGTTGGAAATACACTCAAGAGACATTATGAAACCTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAATGCTGCTTGTTGTGTCACAGTAGTGCTGCTGGGGATTGGGTGAATTGTGGTATATGTGGTGAGTGGGCCCATTTCGGCTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGGCTGGAATATATATGTCCTCATTGTAGTATTACAAATTTCAAGAAAAAACAAAGTGTTGCTAATGGGTATTCTCAAGGGTCAATGTCATCACGACCTTTTTAA 2352 0.4243 MLQFHPQGSSKQTCTLLTVTSATRCAEQKHPQNHHNFPFPELVSSGRLEVQTLCNPEKEQFCKVLESYQPSIVYLQGEQLVNEEVGSVVWQGVELSTPEDISELFGTSLPTAVYLEIPNGESFAEALHLKGIPYVVFWKNAFSRYAACHFRQAFFSVVQSSSTHTWDAFHLAHASFELYCVQNNQVLPTDSNDADSDMGPHLLGDCLKIHIDPPEMGEEEEDDDDDESSSGSLPSIQIHDDEVNLRFLICGEPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKYSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSAQACFNDQLLENHIKNEIIEKGQIVHAQLSEANKQTISEPRRSASIACGATIFEISMKLPQWALQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFYQSSEKDGCANHNIVFSRPPIWLKPPPPTRKRSESSQGASPDIDDGVFSGQGAIKKVDEEEKDRKMVNGISTPLTPARQRLKVSAMRPIPQVRRHRMTPFCGPSEMDGFGGAHVEASVPLVPMKRSSIASSSATQRKSFSSSALSKQVISLNPLPLKKHGCSRGPVQTCSEEEFLKDVMEFLILRGHSRLIPQGGLSEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMGNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKQSVANGYSQGSMSSRPF 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02972 783 Gene3D - 594 700 IPR036431 GO:0003677
Car07g02972 783 SUPERFAMILY FYVE/PHD zinc finger 700 767 IPR011011 -
Car07g02972 783 CDD PHD_ARID4_like 707 758 - -
Car07g02972 783 MobiDBLite consensus disorder prediction 214 235 - -
Car07g02972 783 SMART ARID_2 594 697 - -
Car07g02972 783 SMART bright_3 598 702 IPR001606 GO:0003677
Car07g02972 783 MobiDBLite consensus disorder prediction 449 478 - -
Car07g02972 783 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677
Car07g02972 783 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677
Car07g02972 783 CDD ARID 599 697 - -
Car07g02972 783 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 773 IPR042293 -
Car07g02972 783 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Car07g02972 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 763 IPR013083 -
Car07g02972 783 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02972 Car-Chr7 56288268 56296656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02972 4 772 ARID Transcription Factor Family AT3G43240 59.073 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Car07g02972 ARID 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02972 - - cam:101514085 1579.69