Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02957 ATGATGAAGATGCTACAAAAACTTTACAAGCAATACTATGGGTATGCAGTTAAAGACATAGACCAAAGTGAAAATGATTGTTGTTCAGTTTGTTTAAGCCAAATGTGTAAAGGGGAAAAAGTTATGTTACTACCCTTATGTAACCATAGATATCATGCTGATTGTATTGGTATTTGGTTGAAGAATCACACAACATGTCCTCTTTGTAGAAGCAAAATCATTGACCATGTGAATCAAAATCAACAAAAACAGGTGAAACCCTTTGGAGAATCTGTAGTTGACCTTATACAAAGTTTTTCTGATCTAATTGTAGCTTTTCTTTATATGATTCTTCCATCTAGTATCACTGAGAGTTTTCCTGTTGTTCATTGA 372 0.3306 MMKMLQKLYKQYYGYAVKDIDQSENDCCSVCLSQMCKGEKVMLLPLCNHRYHADCIGIWLKNHTTCPLCRSKIIDHVNQNQQKQVKPFGESVVDLIQSFSDLIVAFLYMILPSSITESFPVVH 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02957 123 PANTHER RING-H2 FINGER PROTEIN ATL2 21 85 - -
Car07g02957 123 Pfam Ring finger domain 27 70 IPR001841 -
Car07g02957 123 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 85 IPR044675 -
Car07g02957 123 SUPERFAMILY RING/U-box 8 77 - -
Car07g02957 123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 77 IPR013083 -
Car07g02957 123 ProSiteProfiles Zinc finger RING-type profile. 28 70 IPR001841 -
Car07g02957 123 SMART ring_2 28 69 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02957 Car-Chr7 56121556 56122370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02957 28 73 C3H Transcription Factor Family AT1G53820 52.174 1.12e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02957 - - cam:101495833 261.151