Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02951 ATGCTAGGTTCATTACCTATACTACCTCTACCAGCTCCTCCTACTGATGGAAATCTCGGTCCTCTCCCTGAGTCTCAACTCACTAAAGAAGAGGAGGACGAGAGGAATGCGAAATTGTCCGCCGAGGAATCGGCCGCACCGACAACAACGGTTGCCACACATACTAGAACTATTGGAATAATTCATCCCCCTCCAGACATTAGAACCATTGTTGATAAAACCTCTCAGTTCGTCGCTAAAAATGGTCCGGAGTTTGAAAAGAGGATTATTGCAAATAATACAGGCAATGTTAAGTTCAATTTTTTAAATTCCTCGGATCCATATCATGCTTATTATCAGCACAGGTTGGCTGAATTTCGCGCTCAGAATCAATCTTCAACTCAACAACCTGGTGATTCGGCTTTGTTGGAATCGGCTACACCTGCGCCGGCGTCTGATAGTAATGATGTAGCAAATGCAGAGAAGCCTGATATTTCTGCACAGTTTAAACCAGTAAGGAAAGTACTTGATCCCCCTGAGGCTGAGCAGTATACGGTTAGGCTTCCTGAAGGAATTACAGGGGAGGAGTTGGATATAATAAAGCTTACGGCACAATTTGTTGCGAGAAATGGGAAATCTTTTTTGACTGGATTGACAAGTAGGGAAATTAATAATCCCCAATTTCATTTCTTGAAACCAACCCACAGCATGTTTACATTTTTCACTTCCCTTGCGGATGCGTATTCAAAGGTTTTGATGCCTCCGAAAGGTTTGACAGAGAAGTTGAAGAAGAGTGTCCCTGACATGACTACTGTGCTTGAAAGGTGTGTCAATAGGCTTGAATGGGAGCGTTCGCAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATAGAGCAAGAAAGAATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAATCCATAGATTTTGCTGACGATGAGGACGAAGAATTACCTCCTCCAATGACTCTTGAGGAGGTTATAAGGAGAAGCAAGATGACACCCATGGAAGAAGATATTGTTGAGCCaggaaaggaagtagaaatggaaatggacgaggaagaggCCCAGCTTGTTGAAGAGGGAATGAGAGCTGCTAGTTTGGAAGACAACGATGAAGGGAAGAAGAGCGAAGTTAGGGTTACCGAAGACCCCGACCCACCAATGAGGATTGTGAAGAACTGGAAGAGACCAGAGGATAGGGTTCCTGCAGATAGAGATTCAACCAAGTTTGTTGTTTCTCCTATTACTGGTGAACTGATTCCTATTAGTGAAATGTCAGAACATATGCGTATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGGATGTTTGCTAAAATTCGTGAAACGACACTGGCACAGGATGATGAAATCTCAAGAAACATTGTTGGACTTGCTCGGACCCGTCCTGATATATTTGGTACTACAGAGGAAGAGGTCTCCAATGCTGTCAAGGCTGAAATTGAGAAGAAAAATGATGAGCAACCTAAGCAGGTTATATGGGATGGTCACAGTGGTAGTATTGGCCGTACTGCAAACCAAGCCATGTCACAAAATATGGGCGGTGAGGATCAAAATGATGCTTCTAATAATGAATTCAAAAACCTTCCTGGTCCTGCTGCACCACCTCCAAGACCTGGTATGCCTTCAATTCGTCCTCTTCCACCACCACCTGGACTAGCTTTGAATCTACCTCGTGTTCCTATGAATACCATGCAGTATTCTGCTCCTAACAACAGTGGCCTTCCGATGCCTCCACCAAGACCACCAGGCATGCACATGATGCCATCTGTTCGGCCAGCGCCCCCTCCTCCAATGCAAATGTCCTCTGGACAGCATTCAATGATGGCTGGTCAACCACCTCCAATGCATCCATCAATGCATCATATGAATAACCAAGGAGTTCCCATTCCTCCACCTCCTGGATCTCAGTTCACTCCTGTTCCACGATCTTATGCTCCTCTCCCTGGTCCACCATCAGGGATGCCTATGATGCATCCACCGCCTTTGCCTCAAGGAGTACCACCGCCGCCACCACCTGAGGAAGCTCCTCCACCGCTTCCAGAGGAACCAGAACCAAAGAGGCAGAAGCACGATGATTCTGCTCTGATCCCTGAGGATAAATTTCTGGCCCAACATCCGGGACCTGCTCGCATAAGTATATCTGTTCCTAATGTTGAGGAAGGAAATCTCAAAGGACAAGTTCTGGAAATCACAGTGCAATCTCTGTCTGAAACTGTTGGCAGCCTGAAGGAAAAAATTGCTGGGGAGATCCAGCTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCAGGCTTTCTCAAGGACAATATGTCACTTGCACATTACAATGTTAGTGGAGGAGAAACACTCTCCCTAACCTTGAGAGAACGCGGTGGTAGAAAGAGATGA 2430 0.4477 MLGSLPILPLPAPPTDGNLGPLPESQLTKEEEDERNAKLSAEESAAPTTTVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEFEKRIIANNTGNVKFNFLNSSDPYHAYYQHRLAEFRAQNQSSTQQPGDSALLESATPAPASDSNDVANAEKPDISAQFKPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLKKSVPDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVESIDFADDEDEELPPPMTLEEVIRRSKMTPMEEDIVEPGKEVEMEMDEEEAQLVEEGMRAASLEDNDEGKKSEVRVTEDPDPPMRIVKNWKRPEDRVPADRDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHSGSIGRTANQAMSQNMGGEDQNDASNNEFKNLPGPAAPPPRPGMPSIRPLPPPPGLALNLPRVPMNTMQYSAPNNSGLPMPPPRPPGMHMMPSVRPAPPPPMQMSSGQHSMMAGQPPPMHPSMHHMNNQGVPIPPPPGSQFTPVPRSYAPLPGPPSGMPMMHPPPLPQGVPPPPPPEEAPPPLPEEPEPKRQKHDDSALIPEDKFLAQHPGPARISISVPNVEEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNVSGGETLSLTLRERGGRKR 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02951 809 PANTHER SPLICING FACTOR 3A, PROTEIN 7 116 - -
Car07g02951 809 PANTHER SPLICING FACTOR 3A, PROTEIN 158 809 - -
Car07g02951 809 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 158 809 IPR045146 GO:0003723|GO:0045292
Car07g02951 809 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 7 116 IPR045146 GO:0003723|GO:0045292
Car07g02951 809 SUPERFAMILY Surp module (SWAP domain) 46 120 IPR035967 GO:0003723|GO:0006396
Car07g02951 809 MobiDBLite consensus disorder prediction 1 52 - -
Car07g02951 809 SMART surpneu2 68 121 IPR000061 GO:0003723|GO:0006396
Car07g02951 809 SMART surpneu2 190 243 IPR000061 GO:0003723|GO:0006396
Car07g02951 809 MobiDBLite consensus disorder prediction 122 157 - -
Car07g02951 809 MobiDBLite consensus disorder prediction 369 395 - -
Car07g02951 809 SUPERFAMILY Ubiquitin-like 704 807 IPR029071 -
Car07g02951 809 SMART ubq_7 730 802 IPR000626 GO:0005515
Car07g02951 809 ProSiteProfiles SURP motif repeat profile. 192 234 IPR000061 GO:0003723|GO:0006396
Car07g02951 809 MobiDBLite consensus disorder prediction 122 147 - -
Car07g02951 809 SUPERFAMILY Surp module (SWAP domain) 169 242 IPR035967 GO:0003723|GO:0006396
Car07g02951 809 Coils Coil 354 374 - -
Car07g02951 809 Gene3D Surp module 185 243 IPR035967 GO:0003723|GO:0006396
Car07g02951 809 Coils Coil 276 296 - -
Car07g02951 809 MobiDBLite consensus disorder prediction 26 40 - -
Car07g02951 809 CDD Ubl_SF3a120 722 802 IPR035563 -
Car07g02951 809 MobiDBLite consensus disorder prediction 642 722 - -
Car07g02951 809 Pfam Pre-mRNA splicing factor PRP21 like protein 261 473 IPR022030 -
Car07g02951 809 MobiDBLite consensus disorder prediction 642 692 - -
Car07g02951 809 Pfam Ubiquitin family 737 804 IPR000626 GO:0005515
Car07g02951 809 MobiDBLite consensus disorder prediction 693 712 - -
Car07g02951 809 ProSiteProfiles Ubiquitin domain profile. 750 806 IPR000626 GO:0005515
Car07g02951 809 Pfam Surp module 190 241 IPR000061 GO:0003723|GO:0006396
Car07g02951 809 Pfam Surp module 68 119 IPR000061 GO:0003723|GO:0006396
Car07g02951 809 PRINTS Proline rich extensin signature 547 563 - -
Car07g02951 809 PRINTS Proline rich extensin signature 591 612 - -
Car07g02951 809 PRINTS Proline rich extensin signature 652 669 - -
Car07g02951 809 PRINTS Proline rich extensin signature 674 699 - -
Car07g02951 809 MobiDBLite consensus disorder prediction 523 539 - -
Car07g02951 809 Gene3D - 698 808 - -
Car07g02951 809 MobiDBLite consensus disorder prediction 523 554 - -
Car07g02951 809 Gene3D Surp module 54 127 IPR035967 GO:0003723|GO:0006396
Car07g02951 809 ProSiteProfiles SURP motif repeat profile. 70 112 IPR000061 GO:0003723|GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02951 737 806 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.143 3.27e-06 46.2