Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02908 ATGTTTTTGGATATAAAGGTAGGAATTGATGAGTTTAATCTGATAGATGCATACATATCACAAGACAGAAAAATCATCAAAGTGAGTAAGTTTTTAAATCCTTCAAAAAAAATGTTTGAAACTTTGGAATATAATAGTCAATATACTTATTCATCAGAAGCTGGAGAAGCTAGTCCACCATCTTCTTCCATGAGAAAGAAGAAAAACAAGAACACAAAAAGGTTTAGTGATGAACAAATCAAATCATTGGAATCTATGTTTGAGACTGAGACAAGGCTTGAGCCAAGAAAGAAGTTGCAGTTAGCTAGAGAGCTTGGATTGCATCCAAGACAAGTTGCTATATGGTTTCAAAACAAGAGAGCTAGATGGAAATCAAAGCAACTTGAAAGAGAATATAATAAACTTCAAACTAGTTACAACAATTTGGCTTCAAGATTTGAATCAATGAAGAAGGAAAGACAAACATTACTAATTCAGTTGCAAAAGCTGAATGATCTCATAAACAAACCAATAGAACAAAGTCATAGCTCTTCACAAGTTAAAGGAGAAAACAGCATGGAAAGTGAATCAGAAAATGGAAACAACATCAAATGTGAGACTGATGTGAAACAAAATCATTCAATGGAAAGATCAGAACATGATGTACTTGGTCCTCTTTCAGATGATGATGATACAAGCATAAAAGTTGAATACTTTGGACTTGAAGATGAACCTGGTCTTTTGAATTTTGCTGAACATGCTGATGGTTCCTTAACATCACCAGAAGATTGGAGTGCTTTTGAATCAAATGATCTATTGGGTCAATCAAGTAGTGATTATCAATGGTGGGATTTTTGGTCTTGA 843 0.3357 MFLDIKVGIDEFNLIDAYISQDRKIIKVSKFLNPSKKMFETLEYNSQYTYSSEAGEASPPSSSMRKKKNKNTKRFSDEQIKSLESMFETETRLEPRKKLQLARELGLHPRQVAIWFQNKRARWKSKQLEREYNKLQTSYNNLASRFESMKKERQTLLIQLQKLNDLINKPIEQSHSSSQVKGENSMESESENGNNIKCETDVKQNHSMERSEHDVLGPLSDDDDTSIKVEYFGLEDEPGLLNFAEHADGSLTSPEDWSAFESNDLLGQSSSDYQWWDFWS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02908 280 Pfam Homeobox associated leucine zipper 126 166 IPR003106 GO:0006355|GO:0043565
Car07g02908 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 58 280 - -
Car07g02908 280 SMART HOX_1 66 130 IPR001356 GO:0003677
Car07g02908 280 MobiDBLite consensus disorder prediction 170 195 - -
Car07g02908 280 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981|GO:0006355
Car07g02908 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 280 IPR045224 GO:0003700
Car07g02908 280 PRINTS Lambda-repressor HTH signature 97 106 IPR000047 GO:0003677
Car07g02908 280 PRINTS Lambda-repressor HTH signature 106 122 IPR000047 GO:0003677
Car07g02908 280 MobiDBLite consensus disorder prediction 51 75 - -
Car07g02908 280 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Car07g02908 280 MobiDBLite consensus disorder prediction 51 65 - -
Car07g02908 280 Gene3D - 61 135 - -
Car07g02908 280 SUPERFAMILY Homeodomain-like 47 128 IPR009057 -
Car07g02908 280 Pfam Homeodomain 73 124 IPR001356 GO:0003677
Car07g02908 280 Coils Coil 118 166 - -
Car07g02908 280 CDD homeodomain 75 127 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02908 Car-Chr7 55200134 55201981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02908 52 280 Homeobox Transcription Factor Family AT2G46680 50.192 7.06e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car07g02908 Homeodomain 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02908 K09338 - gmx:100811208 327.791