Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02900 ATGATGGTTGTAGATTTGTTAACTTCTGGTCCTACTACAACCGCGATTTCTCAAATCATAGATACCATTGGTGAGTTTATATGCTATGCTAGTGATGTACTTGTGCAAAAGAATAGTTTCCAAGAACTTGCATCTTACTTGGAAAGAATTACGCCGATTTTAAAAGAATTGAGAAAAGAAAAAGTGAGTGATTCCGAGACATTCAACCGTGCGATTGATATTATAAATCATGAAACGAAAGATGCAAAGTTATTGGCTCTAGAATGCAGCAAGAAGAGCAAGGTTTATCTACTAATGAAATGTCAGTCGATTGTTAAGCGGTTAGAGAATCACGTGAAGGAACTAAGCAAGGCGCTTGAACTTCTTCCCTTAGCTGCATCAGGTCTTTCTGTTGGAATATTGGAAGAAATTGAAAAGCTTTGTGACAATATGGAGGCCAATGGATTTAAGGCGGCTGTAATAGAAGAAGAGATTTTAGAGAAAATCGAGTCGGGGATAAGGGAAAACAATTGCAACCGTTCCTATGCTAATAATTTGATCATCCTCATTGCTGAGACTCTTGGAATAACAAAAGAGAATTCAACAATGAAGAAGGAACTTGAAGAGTTTAAGAAAGACATTGAAAACTCTCGCGTTAACAAGGAACTGGCTGAAGTTATGCATATGGATCAGATCATTGCTTTGTTGGAAAGAGCCGATGCAACCTCGTCGCCTAACGAAAGGAAAATCAAATACTTTGCAAAACGAAAGTCTTTAGGTAGTCGAATCTTGGAGCCTTTACAGTCATTTTATTGTCCGATCACGCATGATGTTATGGTGGAACCTGTTGAAACTTCATCGGATCAAACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGCAGAAGGAAACAAGTTGTGTCCTATGACATTGATTCCTTTAGATACATCGGTTTTGAGACCGAACAAAACTTTGAAACAGTCCATAGAAGAATGGAAGGATAGAAATACAATGATTACTATTGCTACTTTAAAAGAAAAAATTCAGTTTGGTGATGATGATAATGAAGTGATGCATTGTCTAAAAACTCTTCAGGATTTGTGTGAGCAAAAAGAGCAACACAAGGAATGGGTGATTCTTGAGGACTATATGCAAGTTCTTATCCAAATTCTTGGTTCGAAAAACCGTGACGTAAGGATTCGTGCTCTTAGCACCCTCTGCATTCTGGCAAATGATAACGAAGAAGCTAAGGAAAGGATTGTAATTGTTGATAATGCAATTGACTCGATTGTCCATTCTCTTGGACGACGTCAGGAGGAAAGGAAATTAGCAGTAGCATTACTGCTTGAGTTATCCAAATATGATTTGGCACGAGAACATATTGGAAAAGTTCAAGGTTGCATACTGCTTTTGGTGACTATGTCTAATGGAGATGATAATCAAGCTGCTAGAGATGCGACCGAGCTATTGGATAATCTTTCATACTCTGATCAGAATGTAATACAGATGGCAAAGGCAAATTATTTCAGGCATTTACTGCAGCGTCTCTCCGCAGGACAAGATGATGTGAAGATGATTATGGCAAAAACTTTATCAGAAATGGAGTTAACTGACCACAATAAAGAGTCCTTATTTGATGGTGGTGTACTAGCTCCTCTACTTCACTTGTTCTTACACAATGATCTTCAGGTGAAAACAGTGGCCACTAAAGCTCTTAGGAATCTATCCACTTTAAAGAGAAATGGACTAGAAATGATTCGACAAGGGGCCGTGCGACCGTTTCTTGACCTCCTTTTCCAACATAACATACAAAGATCAAGTTTATGGGAAGATGTAGCCGCCATAATTATGCAACTTGCTTCATCAACTATCTCTCAAGATGCCGGAACACCGATTTTGTTACTAGAATCTGATGATGATGTTTTTGGCCTTTTCCCTCTAGTCAGTGTGACACAACCTGGTGTGCAGCAAAACATTATCCAGACCTTTTGTATCTTGTGTCAGTCATCATCTTCTTCATATATCAAGACCAAGCTAAATGAGTGCTCAGCTATACCAGAACTGGTTAGGTTCTTTGAGAATGAGAATCTAAACCTACGAGCAAGCGCTGTAAAATTGTTTTCTTGCTTGGTTGAGAGTTGCGACAAATCCATTGTACTGGAGAATGTTGATCAGAAATGCATCAATACTTTACTTCAGATCCTAGAATTTTCATCTGATGAAGAGGAAATAGTTTCTGCTATGGAAATAATATGCCATCTTCCAGAAATTGAGCAGATAACTCAGTGGATTATCGATGCTAATGTACTTCCAATCATTTATAAATATGTCCAAGACGGTAGAGACAGAGATAATCAAAGGAGCAACTTAGTCGAGAAAGCTGTCGGTGCTTTACATCGTTTCACAGTTCCAACAAACTTGGAATGGCAAAAAGTTGCAGCCAAAACTGGGATAATCACTGTTTTAGTTCAGTTGCTTGAAAGCGGAACAACGTTGACAAAACAACGTGCGGCGCTGTGTCTTGCCGAGTTTTCTAAAAGCTCGGCTAGGCTCAGCAGACCGATTCTGAAACGCAAAGGACTATGTTGCTTCTCGGGTCCAAAAGAAATTCGCTGCAGAGTTCATGGAGGAATATGCACAGTCATGTCATCATTTTGCCTTTTGGAAGCTGAAGCAATTGGACCACTCACAAGGGCTCTTGGTGAATCTGATTCTGGAGTTTGTGAAGCTTCTTTGGATGCTTTATTAACATTAATTGAAGGTGAAAAACTAGAAAGTGGTAGTAAAGTGCTTGCAAAAGCTAATGCAATACCATTAATAATAAAATTTCTTAGTTCTTCCTCACTTGGGCTGCAAGAAAAGTCTCTACAAGCTTTGGAAAGGATTTTTCAGCTCACAGAGTTCAAACAGATGTTTGGAGCTTCCGCTCAAATGCCTCTAGTTGACTTAACTCAGCGGAATAGCGGTAGACTTCGATCCATGTCGGCTAGAGTATTGGCACATTTGAATGTGCTTCATGATCAGTCTTCATACTTTTAA 3018 0.3903 MMVVDLLTSGPTTTAISQIIDTIGEFICYASDVLVQKNSFQELASYLERITPILKELRKEKVSDSETFNRAIDIINHETKDAKLLALECSKKSKVYLLMKCQSIVKRLENHVKELSKALELLPLAASGLSVGILEEIEKLCDNMEANGFKAAVIEEEILEKIESGIRENNCNRSYANNLIILIAETLGITKENSTMKKELEEFKKDIENSRVNKELAEVMHMDQIIALLERADATSSPNERKIKYFAKRKSLGSRILEPLQSFYCPITHDVMVEPVETSSDQTFERSAIEKWFAEGNKLCPMTLIPLDTSVLRPNKTLKQSIEEWKDRNTMITIATLKEKIQFGDDDNEVMHCLKTLQDLCEQKEQHKEWVILEDYMQVLIQILGSKNRDVRIRALSTLCILANDNEEAKERIVIVDNAIDSIVHSLGRRQEERKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSNGDDNQAARDATELLDNLSYSDQNVIQMAKANYFRHLLQRLSAGQDDVKMIMAKTLSEMELTDHNKESLFDGGVLAPLLHLFLHNDLQVKTVATKALRNLSTLKRNGLEMIRQGAVRPFLDLLFQHNIQRSSLWEDVAAIIMQLASSTISQDAGTPILLLESDDDVFGLFPLVSVTQPGVQQNIIQTFCILCQSSSSSYIKTKLNECSAIPELVRFFENENLNLRASAVKLFSCLVESCDKSIVLENVDQKCINTLLQILEFSSDEEEIVSAMEIICHLPEIEQITQWIIDANVLPIIYKYVQDGRDRDNQRSNLVEKAVGALHRFTVPTNLEWQKVAAKTGIITVLVQLLESGTTLTKQRAALCLAEFSKSSARLSRPILKRKGLCCFSGPKEIRCRVHGGICTVMSSFCLLEAEAIGPLTRALGESDSGVCEASLDALLTLIEGEKLESGSKVLAKANAIPLIIKFLSSSSLGLQEKSLQALERIFQLTEFKQMFGASAQMPLVDLTQRNSGRLRSMSARVLAHLNVLHDQSSYF 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02900 1005 CDD RING-Ubox_PUB 263 303 IPR045210 -
Car07g02900 1005 Gene3D - 865 1003 IPR011989 -
Car07g02900 1005 Gene3D - 633 855 IPR011989 -
Car07g02900 1005 Coils Coil 98 118 - -
Car07g02900 1005 Coils Coil 193 220 - -
Car07g02900 1005 Pfam Armadillo/beta-catenin-like repeat 531 569 IPR000225 GO:0005515
Car07g02900 1005 Gene3D - 337 632 IPR011989 -
Car07g02900 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 336 IPR013083 -
Car07g02900 1005 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Car07g02900 1005 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Car07g02900 1005 Gene3D - 13 127 IPR036537 GO:0007166
Car07g02900 1005 SUPERFAMILY RING/U-box 250 331 - -
Car07g02900 1005 SUPERFAMILY ARM repeat 333 596 IPR016024 -
Car07g02900 1005 SUPERFAMILY ARM repeat 504 852 IPR016024 -
Car07g02900 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 583 IPR000225 GO:0005515
Car07g02900 1005 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Car07g02900 1005 SUPERFAMILY ARM repeat 783 995 IPR016024 -
Car07g02900 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1005 - -
Car07g02900 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1005 - -
Car07g02900 1005 SMART arm_5 406 446 IPR000225 GO:0005515
Car07g02900 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Car07g02900 1005 SMART arm_5 530 570 IPR000225 GO:0005515
Car07g02900 1005 SMART arm_5 665 705 IPR000225 GO:0005515
Car07g02900 1005 SMART arm_5 750 796 IPR000225 GO:0005515
Car07g02900 1005 SMART arm_5 364 404 IPR000225 GO:0005515
Car07g02900 1005 SMART arm_5 447 488 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02900 Car-Chr7 54997740 55003629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02900 261 1005 U-box Gene Family AT1G76390 28.025 1.01e-60 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02900 - - gmx:100787128 1447.57