Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02889 ATGGGAAGAGCCCCTTGTTGTGCCAAAGTTGGTTTACACAAAGGTCCATGGACTCCTAAAGAAGATACATTGCTTACAAAATATGTTCAAGCTCATGGTGAAGGCCAGTGGAAATCACTTCCAAAAAAAGCTGGTCTTCTTAGATGTGGAAAAAGTTGTAGACTTAGGTGGATGAATTATCTTAGACCAGATATAAAGAGAGGTAACATATCTCCAGATGAAGATGATCTTATAATTAGATTACATTCACTTCTCGGAAATAGATGGTCCCTTATAGCGGGACGATTACCAGGAAGAACGGACAATGAAATAAAAAACTATTGGAACACATATCTTTGCAAAAAAATGCAAAATGATCAACAAAAATGTGATGAGATAGATCTTGaacaaaaacaacatcaagtcaagaataacaacaaaaagaaaaagagcaataagcaaaagaagagtgagaagaacaaAGGTACAAAGAATGGGAATAATATTCAAGAGGAAGAGAAAATTCAAGTTTATTTACCAAAACCAATTAGGATTAAGGCCTTAACTTTACCAAGAACGGATAGTGGTACTTCTACATTAGAATCAAATTCATCAATTGCAAGTCAAGAAAAAGAAGGAACAAAACAAGTTGTTATAaacaacaacaacaacaataacaaTGTAATTCACGAGGTTGGTGAGATGGGTGAAAATGATGGTTTTGGTTTTTCAAGTGATGACCATGACTTAGTCAACGAGATTGAATCCGGATCATTTTTTGACACGTGTAACGATCATGGTATGCTAGAGAAACTCTATGATGAATACTTGCAATTATTGAATTTAGACGATTGTAATTTTGAGTTCGATTCTTTTGCCGAATCTTTCTTTGATTGA 876 0.3105 MGRAPCCAKVGLHKGPWTPKEDTLLTKYVQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNISPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTYLCKKMQNDQQKCDEIDLEQKQHQVKNNNKKKKSNKQKKSEKNKGTKNGNNIQEEEKIQVYLPKPIRIKALTLPRTDSGTSTLESNSSIASQEKEGTKQVVINNNNNNNNVIHEVGEMGENDGFGFSSDDHDLVNEIESGSFFDTCNDHGMLEKLYDEYLQLLNLDDCNFEFDSFAESFFD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02889 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car07g02889 291 CDD SANT 16 61 IPR001005 -
Car07g02889 291 PANTHER MYB TRANSCRIPTION FACTOR 1 282 - -
Car07g02889 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car07g02889 291 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car07g02889 291 MobiDBLite consensus disorder prediction 136 150 - -
Car07g02889 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car07g02889 291 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Car07g02889 291 Gene3D - 71 116 - -
Car07g02889 291 CDD SANT 71 112 IPR001005 -
Car07g02889 291 MobiDBLite consensus disorder prediction 186 206 - -
Car07g02889 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car07g02889 291 Gene3D - 14 66 - -
Car07g02889 291 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 282 - -
Car07g02889 291 MobiDBLite consensus disorder prediction 130 166 - -
Car07g02889 291 SMART sant 13 63 IPR001005 -
Car07g02889 291 SMART sant 66 114 IPR001005 -
Car07g02889 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02889 Car-Chr7 54863775 54865091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02889 1 116 MYB Transcription Factor Family AT5G49330 73.276 6.11e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car07g02889 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02889 K09422 - gmx:100101857 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03147 03 76299923 76301301 Car07g02889 07 54863775 54865091 PCT