Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02880 ATGGCACATCTTGAGACTAATCTAAGTGCTTCAAGGATTTCTCAACAAGAAAAAGGTGTTAAAAATGATGATATGTATGAAGAATTATGGAAGTTGTCTGCAGGACCTTTGGTTGATGTTCCTAATACTGGTGACAAAGTTTTCTACTTTCCTCAAGGTCACATGGAACAACTTCAAGCATCTACTGATCAGGAATTGAACCAAGAAATTCCTCATTTCAATCTACCTTCTAAGATTTTATGCCGTGTTGTCAACATTCAGTTGTTGGCTGAGCAAGAAACTGATGAGGTTTATGCTTGTGTTGCTTTGCTTCCAGAATCAGATCAAACCGTGCCTGCGAATCCTGATCCGGATCGTTCCGAGGCTCCGAAACAAAAGTTTCATTCATTTTGCAAAATATTAACAGCTTCTGATACTAGCACACATGGTGGATTTTCAGTTCTGAGGAAGCATGCTACCGAGTGCTTGCCTCCATTGGACATGACACAAGCAACTCCAACTCAGGAGCTAGCAGCAAAGGATCTTCATGGATATGAGTGGAAGTTTAAGCACATATATAGAGGTCAACCAAGGAGGCACTTGCTTACGACCGGCTGGAGTACATTCGTCGCATCAAAAAGATTGGTGGCCGGAGATGCTTTTGTTTTCCTAAGGGGAGAGCACGGACAACTGAGAGTCGGCGTTAGGCGAATGGCTAAGCAGCAGAGTTCTATGCCTTCATCAGTGATATCAAGCCAAAGTATGCATCTTGGAGTTCTTGCTACTGCTTCTCATGCTGTTATGACTCGTACCATGTTCGTCGTTTATTACAAACCAAGGACTAGTCAGTTTATTGTTGGATTGAACAAGTATTTGGAAGCAGTCAACCATAATAAGTTTTCTGTTGGTATGAGATTCAAGATGAGATTTGAAGGAGAGGACTCACCTGAAAGAAGATATTTATTACTATGTGATTTGGTCAGATTTTCTGGCACTATTGTTGGAGTTGGGGATGTGTCTGCAGGATGGTCAAACTCTCAGTGGAGATCATTGAAGGTTCAATGGGATGAACCAGCAACAATTCCAAGACCAGATAGAGTTTCTTCTTGGGAGATTGAGCCTTTTATGTCTTCTCCTGCTTTGAATGTCACTCAAACAGCAATGAAGAGCAAAAGATCTAGGCCTGCTTCCGATGTTTCATCTTGCGGTTTTTGGTATCCTGGATCTTCTCCGGCTCATGAGCTTACACAAGAAGTCCAAAACAAAGAGAATCAAATTGTATGCTCTAGAGTCATGGTGGAAGGAATTTGGCCTAATTCACCAAATTTGAATGTTACTTCCAACCCTTTTTCGGACGCCAAAAACAAAGGTTACCCTAACATAAACATTGCACCTAGATTAAGCGACGGCCCTGCGTGCGACCGATTAGAAGACGCAAAGAAGACCGAGAATCCCTTAGATTGTTGGTTATTTGGAGTTAATTTGAATAACAACAACAAATGTAGCAATGTTAATTCATGTTTGGATAAAGAAGTTGGATGTGGAAGTTTAAGCAATGTTACTAGTAGTGGTCCCAAAGAATCTAACCCTGCAAATGCATGTGAAACTGAAAAGATTATTCAGAGTCCAAACTATTCACTGTCCAACAAGAAAGGGCAGAAGCAAATTATTTCTGATGCATCACCAAATGAATGGCAGAACCAGTTGGCCAATGTACCATCCATGAGAACAAGGACTAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCACTTGATTTAAGCATGTTAAATGGCTATGATGATCTCATAGATGAAGTTGAAAAATTGTTTGATATTAAAGGAGAGTTACGTTCACAAAACAAATGGAGAGTTACTTTCACTGATAATGAAAATGACACAATGCTTGTTGGTGATGATCCATGGCCGGAATTTTGCAACATGGTGAAGAAAATTTTCATTTGTTCAAAAGAGGAGTTAAAGAAAATGAAATGCAAGCTACCTAATTCTTCATTAGAGATTGAAGAGACATTGTTGAGTTTAGATTCACATAATAGGGATGAGACTCAACAAACTCACGTGACTTAA 2067 0.4011 MAHLETNLSASRISQQEKGVKNDDMYEELWKLSAGPLVDVPNTGDKVFYFPQGHMEQLQASTDQELNQEIPHFNLPSKILCRVVNIQLLAEQETDEVYACVALLPESDQTVPANPDPDRSEAPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTQATPTQELAAKDLHGYEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEHGQLRVGVRRMAKQQSSMPSSVISSQSMHLGVLATASHAVMTRTMFVVYYKPRTSQFIVGLNKYLEAVNHNKFSVGMRFKMRFEGEDSPERRYLLLCDLVRFSGTIVGVGDVSAGWSNSQWRSLKVQWDEPATIPRPDRVSSWEIEPFMSSPALNVTQTAMKSKRSRPASDVSSCGFWYPGSSPAHELTQEVQNKENQIVCSRVMVEGIWPNSPNLNVTSNPFSDAKNKGYPNINIAPRLSDGPACDRLEDAKKTENPLDCWLFGVNLNNNNKCSNVNSCLDKEVGCGSLSNVTSSGPKESNPANACETEKIIQSPNYSLSNKKGQKQIISDASPNEWQNQLANVPSMRTRTKVQMQGVAVGRALDLSMLNGYDDLIDEVEKLFDIKGELRSQNKWRVTFTDNENDTMLVGDDPWPEFCNMVKKIFICSKEELKKMKCKLPNSSLEIEETLLSLDSHNRDETQQTHVT 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02880 688 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Car07g02880 688 Pfam AUX/IAA family 566 605 IPR033389 -
Car07g02880 688 Pfam AUX/IAA family 613 652 IPR033389 -
Car07g02880 688 Gene3D - 127 231 IPR015300 -
Car07g02880 688 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 663 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car07g02880 688 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
Car07g02880 688 PANTHER AUXIN RESPONSE FACTOR 11 10 663 - -
Car07g02880 688 Gene3D - 292 373 - -
Car07g02880 688 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Car07g02880 688 SMART B3_2 130 232 IPR003340 GO:0003677
Car07g02880 688 Pfam Auxin response factor 256 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car07g02880 688 SUPERFAMILY CAD & PB1 domains 561 645 - -
Car07g02880 688 Gene3D - 565 657 - -
Car07g02880 688 CDD B3_DNA 128 230 IPR003340 GO:0003677
Car07g02880 688 ProSiteProfiles PB1 domain profile. 569 650 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02880 Car-Chr7 54764402 54769858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02880 25 656 B3 DNA Binding Superfamily AT4G23980 55.932 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car07g02880 B3 7.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02880 K14486 - gmx:100790981 1040.02