Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02878 ATGGAGCAACATTTGAACTTCACAACTGAAGATGACGTGGCAGTAAAAACCGTTACCGAAAATCCCGCCGAGAAATCCGGTAACGTTCGTAGCGGCACGCGGCATCCAGTTTACCACGGCGTCCGGAAACGGCGGTGGGGAAAATGGGTATCAGAAATTAGGGAGCCGCGGAAGAAGTCGCGGATATGGCTTGGATCTTTTCCGGCGCCGGAGATGGCGGCGAAAGCCTACGACGTTGCGGCGTACTGTTTGAAAGGTCGAAAAGCGCAGCTCAATTTCCCCGACGAGGTGCACCGTTTACCGTTGCTTCCTCCACCGTCTTCAGCAAGGGATATTCAGGCTGCAGCGGCGGAAGCGGCTCGTATGATGGTTAAGAGTGCTGCGTTGCCGGAGAATAGCAGCATTGGTTCTGGCGGTGGGGATGATTTTTGGGGTGAGATTGAGCTGCCGGAGCTTATGAATGGAACGTGGTGGAGTTACTCTGCAGATATTGCGGCGGTGCCGGAGATTGAAGTTCCTCCGCGGCAACAATCGTTCACGGCATGTCTTTAG 552 0.5453 MEQHLNFTTEDDVAVKTVTENPAEKSGNVRSGTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPLLPPPSSARDIQAAAAEAARMMVKSAALPENSSIGSGGGDDFWGEIELPELMNGTWWSYSADIAAVPEIEVPPRQQSFTACL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02878 183 CDD AP2 38 95 IPR001471 GO:0003700|GO:0006355
Car07g02878 183 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Car07g02878 183 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Car07g02878 183 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700|GO:0006355
Car07g02878 183 Pfam AP2 domain 36 86 IPR001471 GO:0003700|GO:0006355
Car07g02878 183 SUPERFAMILY DNA-binding domain 37 96 IPR016177 GO:0003677
Car07g02878 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 183 - -
Car07g02878 183 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Car07g02878 183 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 183 - -
Car07g02878 183 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02878 Car-Chr7 54721006 54721753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02878 14 183 AP2-EREBP Transcription Factor Family AT1G01250 59.770 3.44e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car07g02878 AP2 7.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02878 K09286 - gmx:100802845 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03144 03 76280596 76281298 Car07g02878 07 54721006 54721753 PCT