Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02877 ATGAAGATTGAAGTGGGTTTAGGAGTAGGTGGGTTATGGAACGAAGAAGAAAAAGCTATGGTGGTTGAAGTTTTAGGGGTTAATGCATTAAATTACTTGATTTCAAATTCAGTTTCTAATGAGAATCTTTTGATGGCTATTGGTAGTGGTGAGAATCTTCAAAACAAGCTTTCTGATCTAGTTGAAAGACCGAACGTTTTGAATTTCAGTTGGAATTATGCAATTTTTTGGCAAATTTCTCAGTCAAAATTTGGTGATTGGGTTTTAGGTTGGGGTGATGGGTGTTGTAGAGAACCAAAAGAACAAGAACAAGAGAAACAAGAAGAAGACTTAAGAATGAAAGGTGTTTATGTTGAGGATGAAAAGAAACAAAGAATGAGGAAAAGGGTTTTGCAGAAGCTTCATACAACATTTGGTGGTTCAGATGAAGACAATTATGCATTTGGATTGGACCGTGTTACAGACACAGAGATGTTTTTTCTTGCTTCAATGTATTTCTCTTTTCCTCGTGGACATGGTGGACCAGGTAAGTCATTTGCAACTGGGAAGCATTTGTGGCTAATTGATGCATTGAAAAGtgattatgatgatgatgattatTGTGTAAGGTCTTTCTTGGCTAAATCTGCTGGATTCAAGACTATTGTTTTAGTTCCTACTGATTTAGGTGTTGTTGAATTGGGTTCTGTTAGAAATGTTTGTGAGAGCTTTGAGTTGTTGCAAACTGTTAAATCTGTGTTTTCATCACAATCATCATTTCCTAGAGTTAAGTCCATTTCATTATCAATGGATGATGAAAAGAGAGATGAGAATGCACCTTTTTCTTGTTTGGCAGTTGGTGAGAGTATTAAGACCAATGTTAATAATGTTAATCATAATCATCATTTGAATAATCATAGTAGAGTAGAGGGGGTTGGAGTTCCAAAGATTTTCGGGCAGGAATTGAACTCAGCGACCGCGACGCCTTCTAGGGAAAAACTTGCTGTTAGGAAAATGGAGGAGAGGCCGTGGGGAGGCCATCCGAATGGAAATGGTGTTAGTTTTCCAAATGGTGTTAATGGTTCTAGTTGGAGAGCTAGTCAAGTGGTGAGGCAGCATGCTCCTGTTGACGTTTTTGCTCCTAGGATGTCGCCTTCTACGAGCAATGCGCCGGAGGTAGGGAATGATGTGAGGCACGAATTCGTGCTTAACAACTATCAACAGCAACGGCAGGCGCAAATGCAGATTGATTTCTCGGGTGCGACCTCGAGGCCTTCTGTGAGATCGATTGTTGGTGAATCAGAGCTTTCTGATATTGATAGGGAGGAAAAACCGAGTCCCTCGGATGAAAGGAGGCCGAGGAAGAGGGGTAGAAAGCCGGCAAATGGAAGGGAAGAACCCCTCAATCATGTGGAAGCAGAGAGACAAAGACGCGAGAAGTTGAACCAGCGTTTCTATGCTCTAAGAGCTGTTGTGCCAAATATTTCCAAGATGGACAAGGCGTCTTTGTTGGGGGATGCTATTGCTTACATCAACGAGCTTCAAGCCAAACTCGTGACAATGGAATCCGAACGAGCACAATTCGGAAGCACTTCTAGAGATGGATCATCATCAGTATTGCAAGCAAATCCTAGAGCTCCCGATGTGGATATTCAAGCTGCACAAGATGGTGTTATTGTAAAGGTTAGTTGCGCTATCGATGCACACCCTATTTCAAAACTCATCCAAACATTCAAAGATGCCGAAATCAGTATCGTTGAGTCAAAACTCAACACTGCTAGTGATACCGTCTTCCACACATTCATAATCAAGTCTCAAGGTTCCGAGCAGCTGACAAAGGAGAAATTGATTGCAGCATTTTCCAGAGAATCCAACTCTTTATAG 1863 0.4096 MKIEVGLGVGGLWNEEEKAMVVEVLGVNALNYLISNSVSNENLLMAIGSGENLQNKLSDLVERPNVLNFSWNYAIFWQISQSKFGDWVLGWGDGCCREPKEQEQEKQEEDLRMKGVYVEDEKKQRMRKRVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKSFATGKHLWLIDALKSDYDDDDYCVRSFLAKSAGFKTIVLVPTDLGVVELGSVRNVCESFELLQTVKSVFSSQSSFPRVKSISLSMDDEKRDENAPFSCLAVGESIKTNVNNVNHNHHLNNHSRVEGVGVPKIFGQELNSATATPSREKLAVRKMEERPWGGHPNGNGVSFPNGVNGSSWRASQVVRQHAPVDVFAPRMSPSTSNAPEVGNDVRHEFVLNNYQQQRQAQMQIDFSGATSRPSVRSIVGESELSDIDREEKPSPSDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLVTMESERAQFGSTSRDGSSSVLQANPRAPDVDIQAAQDGVIVKVSCAIDAHPISKLIQTFKDAEISIVESKLNTASDTVFHTFIIKSQGSEQLTKEKLIAAFSRESNSL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02877 620 MobiDBLite consensus disorder prediction 334 353 - -
Car07g02877 620 Pfam Helix-loop-helix DNA-binding domain 462 508 IPR011598 GO:0046983
Car07g02877 620 CDD bHLH_AtAIB_like 455 518 - -
Car07g02877 620 MobiDBLite consensus disorder prediction 410 469 - -
Car07g02877 620 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 461 521 IPR036638 GO:0046983
Car07g02877 620 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 618 - -
Car07g02877 620 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 458 507 IPR011598 GO:0046983
Car07g02877 620 PANTHER MYC 1 618 IPR045084 GO:0003700|GO:0006355
Car07g02877 620 MobiDBLite consensus disorder prediction 427 469 - -
Car07g02877 620 Gene3D - 451 523 IPR036638 GO:0046983
Car07g02877 620 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 247 IPR025610 -
Car07g02877 620 SMART finulus 464 513 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02877 Car-Chr7 54673957 54676922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02877 7 616 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.681 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car07g02877 bHLH-MYC_N 4.2e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02877 - - gmx:100807078 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03143 03 76263318 76265474 Car07g02877 07 54673957 54676922 PCT