Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car07g02870 | ATGATAATTAAGCGTACTATTATGAAAACTGAAACGGCGAATTTAAAACGGTGTAAATTGGAGGAGCTTGATTTCGAAGGCCACGAAGGTTGTTCAGGGATTCAGAAGAAGCGTAAGGTGAATGCGTTTTACTCATTGGGTGATTCTGAACATTTCAGTAGTGGTTCCGGTTCTTGGAGTAGTGAAGTTTCGCATTGGAGTTCTGATGGTGGTGGTGGTGAGGTTGAGTTCAAATCAAATTCTGCATTTTTGAATGGTAATACGATGAATAAGAAATGCTTGGTGGTGGCTCGGCCTCCGTTATTGCGGTCGTCGCGCGGCCGCCTTCAGACGCTTCCGTCGAGGTTCAATGACTCGGTGGTTCTTGATACATGGAAGAAGAATCGAGGAATGGAAACAGATGATGGAGATTCCAGCTTTGAGGATGATAAGAGTTTTGTTGAGGATGATGACAAGGTTAAGAAGAGTGATGTGAATTATTTGAAAACTTGTGAAGTGAAGGCTGATGAAATGGAGGGTGGTGATTTATCTAGTTTGGGTAGAAGGATAGTGAAGACTGAGAGTAATGCTTTTGGTTCTGGTCTTAGTTTTGAGGGTATGGAGCAAAAGCCTAATGAGAATGTTGGAAAGAGAAAAGAGGTATATAGGCCAGAGGATTTTGCTTTGGGTGATATTGTTTGGGCTAAATGTGGGAAGAGATTTCCAGTTTGGCCTGCCGTGGTGATTGATCCTTTCTTGGAGGCTCCTAAATCTGTCTTGAGCTGTTGTGTTCCCAATGCGCTTTGTGTGATGTTTTTTGGTTATTCGAAAAATGGAACTCAAAGGGATTATGCGTGGGTGAAGCAGGGAATGGTATTCCCCTTCTCGGAGTTCATGGACAGATTTCAGGGGCAGACCCAGTTGTACAAGAGCAAACCTAGTGACTTTCGCATGGCGCTGGAGGAGGCAATGTTGGCAGAAGATGGTATTTTGGAATCACTTTTGGGAGCGGAGGAAATTGCTACTGTAAGCAATCGTAGACTTGAAGAAGTCTTGGTTTCAAATGTTGATCAAGAATATTACTGCCAGGATCAGGATACTAAGTATTGTGCTAGCTGTCATTTGATGTTGCCATGCAAAATTATGAAGAAGGTTAAGGATTCAAGTTATGCACATCAATTTTATTGCAAACATTGTGCCAAGTTACAAAAATCAAAACAATATTGTGGAATTTGCAAAAAGGTTTGGCATCATTCAGATGGTGGGAATTGGGTATGTTGTGATGGTTGCAATGTTTGGGTGCATGCTGAGTGTGACGAAATATCTACCGAATATTTCAAGGATCTAGAAAATACCGATTACTATTGTCCAGATTGCAAAGAACTAATGAATTGTAAATTACGGGAATCACTAACACACAAATCAAAAATCAAATCAATAGATAATAGCCAAAAATCTATGGTACCTGAGAAGGTGGCGGTGGTGTGCAATGGCATGGAAGGAATTTACATCCCGAAACTTCATTTAATTATGTGCAAGTGTGACTCTTGTTGTTCAAGGAAGCAGACACCGAGTGAATGGGAACGGCATACTGGTAGCAGAGCCAAAAAATGGAAATATAGTGTGAAAGTGAAAAGCACAATGCTACCACTAGAAAAATGGATGATGGAGCATATTCCACAAGATGGAGTACCGTGGCACTTAGATCAGCAGCAGGTGCTTGCCTTTTTGCAAGAGAAGTATGAACCAGTTCTTGCAAAATGGACGACAGAAAGGTGTGCTGTTTGTAGATGGGTTGAAGATTGGGAAGATAACAAAATTATTATCTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGTGCAAATGATATTCAAGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTTGAAAGAGAGTGTTGCCTTTGTCCAGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTCGAGATGTTGTGGGTTCATATAACATGCGCTTGGTTTCGACGTGAAGTTGCTTTCCAAAACCCTAAGGTCATGGAACCTGCCCTCGGAATTCTTAAAATTCCTCCTAATTCCTTTGTGAAGACTTGTGTAATTTGTAAACAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTAATGTGCGCATTAAGAGCTGGGTATACCATGGAATTGCATTCTATGGAGAAGAATGGGACTGAAATAATAAAGAAGCTAATATACTGCGCAGTTCATAGAGTCCCAAATCCAGATTCTGTACTGGTTGCACATACATCCCTGGGGATTTTCTCTCCCAGAGCATCGATTCAGAATCACAAAGGATGCTTTCGGGGATCAAGGCTGGTTTCATCAAAGAATATAGTTCTCAATGAATGTTCAACCACTGAAAATGATATGGTTGAGCCATTGTCTAGTGCCAGATGTCGTGTGCACCGAAGGTCTCCTAATAAGAGGGCTGATGTGCCAGTTATTCACTTGCTGAGGGGACCCATCCTTCATTCTCTAGGTGCAATAACTCAATTGAACAACTATAAGGATGCTGAAGATTCTAAAGTATTTACTTCTTTCAAGGAACGTCTTCACCATTTGCAGAAAACAGAAAAGCTTAGAATTTGCTTCGGAAAATCGGGAATTCATGGATGGGGTCTCTTTGCTCGAAGAGATATACAAGAAGGAGATATGGTTGTTGAGTATCGTGGTGAGCAGGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAATATCGTTCAGAAGGCAAAGATTGCTATTTGTTCAAGGTCAGTGAGGAAGTAGTCATCGATGCAACACACAAGGGCAATATAGCACGTTTAATAAACCACTCATGCATGCCAAACTGCTATGCAAGGATTATGAGTTTTGGTGATCAAGAGAGCCGGATTGTTCTTATTGCCAAAGCCAATGTCTCTGCTGGTCAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGAGGAATTGAAAGTTCCCTGCCTATGCAAAGCACCCAATTGTAGAAAATTTATGAACTAG | 3054 | 0.4136 | MIIKRTIMKTETANLKRCKLEELDFEGHEGCSGIQKKRKVNAFYSLGDSEHFSSGSGSWSSEVSHWSSDGGGGEVEFKSNSAFLNGNTMNKKCLVVARPPLLRSSRGRLQTLPSRFNDSVVLDTWKKNRGMETDDGDSSFEDDKSFVEDDDKVKKSDVNYLKTCEVKADEMEGGDLSSLGRRIVKTESNAFGSGLSFEGMEQKPNENVGKRKEVYRPEDFALGDIVWAKCGKRFPVWPAVVIDPFLEAPKSVLSCCVPNALCVMFFGYSKNGTQRDYAWVKQGMVFPFSEFMDRFQGQTQLYKSKPSDFRMALEEAMLAEDGILESLLGAEEIATVSNRRLEEVLVSNVDQEYYCQDQDTKYCASCHLMLPCKIMKKVKDSSYAHQFYCKHCAKLQKSKQYCGICKKVWHHSDGGNWVCCDGCNVWVHAECDEISTEYFKDLENTDYYCPDCKELMNCKLRESLTHKSKIKSIDNSQKSMVPEKVAVVCNGMEGIYIPKLHLIMCKCDSCCSRKQTPSEWERHTGSRAKKWKYSVKVKSTMLPLEKWMMEHIPQDGVPWHLDQQQVLAFLQEKYEPVLAKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGANDIQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHITCAWFRREVAFQNPKVMEPALGILKIPPNSFVKTCVICKQSHGSCTSCCKCATYFHVMCALRAGYTMELHSMEKNGTEIIKKLIYCAVHRVPNPDSVLVAHTSLGIFSPRASIQNHKGCFRGSRLVSSKNIVLNECSTTENDMVEPLSSARCRVHRRSPNKRADVPVIHLLRGPILHSLGAITQLNNYKDAEDSKVFTSFKERLHHLQKTEKLRICFGKSGIHGWGLFARRDIQEGDMVVEYRGEQVRRSVADLREAKYRSEGKDCYLFKVSEEVVIDATHKGNIARLINHSCMPNCYARIMSFGDQESRIVLIAKANVSAGQELTYDYLFDPDEREELKVPCLCKAPNCRKFMN | 1017 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car07g02870 | 1017 | Pfam | PHD-finger | 401 | 454 | IPR019787 | - | |
| Car07g02870 | 1017 | SUPERFAMILY | SET domain | 868 | 1014 | IPR046341 | - | |
| Car07g02870 | 1017 | ProSiteProfiles | PWWP domain profile. | 222 | 291 | IPR000313 | - | |
| Car07g02870 | 1017 | Gene3D | SET domain | 790 | 1017 | IPR046341 | - | |
| Car07g02870 | 1017 | ProSiteProfiles | Zinc finger PHD-type profile. | 399 | 455 | IPR019787 | - | |
| Car07g02870 | 1017 | Pfam | PWWP domain | 223 | 319 | IPR000313 | - | |
| Car07g02870 | 1017 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 635 | 753 | IPR013083 | - | |
| Car07g02870 | 1017 | SMART | PWWP_4 | 220 | 289 | IPR000313 | - | |
| Car07g02870 | 1017 | SMART | PHD_3 | 696 | 752 | IPR001965 | - | |
| Car07g02870 | 1017 | SMART | PHD_3 | 401 | 453 | IPR001965 | - | |
| Car07g02870 | 1017 | SMART | PHD_3 | 585 | 632 | IPR001965 | - | |
| Car07g02870 | 1017 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 581 | 634 | IPR013083 | - | |
| Car07g02870 | 1017 | Pfam | PHD-zinc-finger like domain | 639 | 751 | - | - | |
| Car07g02870 | 1017 | ProSiteProfiles | Zinc finger PHD-type profile. | 583 | 634 | IPR019787 | - | |
| Car07g02870 | 1017 | ProSiteProfiles | SET domain profile. | 875 | 992 | IPR001214 | GO:0005515 | |
| Car07g02870 | 1017 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 2 | 1017 | IPR025780 | - | |
| Car07g02870 | 1017 | Gene3D | - | 213 | 322 | - | - | |
| Car07g02870 | 1017 | CDD | PHD_ATX3_4_5_like | 585 | 631 | IPR042011 | - | |
| Car07g02870 | 1017 | ProSiteProfiles | Post-SET domain profile. | 1001 | 1017 | IPR003616 | - | |
| Car07g02870 | 1017 | Pfam | SET domain | 886 | 991 | IPR001214 | GO:0005515 | |
| Car07g02870 | 1017 | SUPERFAMILY | FYVE/PHD zinc finger | 584 | 648 | IPR011011 | - | |
| Car07g02870 | 1017 | Gene3D | - | 469 | 555 | IPR010919 | - | |
| Car07g02870 | 1017 | Pfam | PHD-finger | 598 | 632 | - | - | |
| Car07g02870 | 1017 | ProSitePatterns | Zinc finger PHD-type signature. | 586 | 631 | IPR019786 | - | |
| Car07g02870 | 1017 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 393 | 457 | IPR013083 | - | |
| Car07g02870 | 1017 | CDD | PHD_TCF19_like | 402 | 452 | - | - | |
| Car07g02870 | 1017 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 637 | 752 | IPR034732 | - | |
| Car07g02870 | 1017 | SUPERFAMILY | FYVE/PHD zinc finger | 399 | 464 | IPR011011 | - | |
| Car07g02870 | 1017 | PANTHER | PHD FINGER PROTEINS | 1 | 1017 | - | - | |
| Car07g02870 | 1017 | SUPERFAMILY | Tudor/PWWP/MBT | 213 | 324 | - | - | |
| Car07g02870 | 1017 | CDD | SET_SETD1-like | 864 | 1013 | - | - | |
| Car07g02870 | 1017 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE | 1 | 1017 | - | - | |
| Car07g02870 | 1017 | SMART | PostSET_3 | 1001 | 1017 | IPR003616 | - | |
| Car07g02870 | 1017 | SMART | set_7 | 875 | 998 | IPR001214 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car07g02870 | Car-Chr7 | 54523500 | 54536434 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car07g02870 | 586 | 742 | C2H2 Transcription Factor Family | AT3G14740 | 33.537 | 5.37e-20 | 90.9 |
Transcription factors information