LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g02866	ATGAGTTCTAAAGAAAAGAAATTTGTGAGATTTGAAGATTGGAAATCAGAATCATCATCTTTTAATATTGAAAAATATGATTCTTCAATTGATGGACTTGAAAAAAGAAAAGTTAGATCAAGTTTAAGTCCTGCAAACAATGAATCAGAGAAAAAATCAGTTTGTAGACGCAATGTTCTTGATCCACAAGGTCCACTACTTCAAAAATGGAACAAGATCTTTGTCATAACGTGTGTGATGGCGATATCGATGGACCCGTTGTTCTTTTACATACCTGTGATTGATGAGAAGAGAAAATGTCTTAAATTGGATGGAACATTGAAGATTACTGCTGGTGTTCTTCGCACATTCTTCGATCTTTTCTACATTCTTCGCATTGTTTTTCAGTTTCGAACCGGGTTTATTGCCCCTTCTTCGCGTGTATTCGGAAGGGGCGAACCAGTTGATGATCCTTTTGCTATAGCCATGAGATACTTAAGTTCTCACTTCATCATTGATATTCTATCAATTCTTCCACTTCCTCAGATGGTAATGTTAGCTATGATTCCAATTCCACAACGCTCAGTTCCATGTATAGCAAAGGATTGGTTGAAGTATATGATAATAGCGCAGTATGCGCCGAGACTATTGCGAATCTATCCATTGTTCAAAGAAGTAACAAGCACTTCTGGTATATTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTTTATATGCTAGCAAGTCATGTTGTTGGAGCTTTTTGGTACTTGTTTTCGATAGAATCGCAGTTGCGCTGTTGGCATCGACAATTGAAGCATACTGCATTCTCTGATGATTCATATTTGAGCTGTGGACGACGAGTTAATTCGAGTGTTTTATCGCTTCTCAACAATGCTACTACTTGTCCTTACACTGATCCTGATGAAATCATTGATCCAATGGTTTTCAATTTTGGAATATTCATCGATGGTCTTAAGTCTCGTGTGGTTGAATCTAGAACTAATTTTCATCATAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTGTTGGACAGAACTTGAAGACAAGCACTTATATTGGAGAGATAATATTTGCAATATTCATAGCAGTGTTTGGATTGGTGCTATTTGCATTACTTATTGGAAATATGCAGAAATATCTACAATCTACAACAGTTAGAGTTGAAGAGATGAGAATAAAAAGGAGGGATGCAGAACAATGGATGTGCCATAGAATGCTACCGGAGTACTTAAAGCAAAGAATTAGAAGATATGAACAATACAAATGGCAAGAAAATCGCGGTGTTGAAGAGGAGACATTAATTCGGAACCTCCCTAAAGATCTAAGAAGAGACATAAAGAGACATCTTTGCTTAGATTTACTTAAAAAAGTGCCAATATTTGGAAACATGGATAAACAATTGTTGGATGCAATGTGTGATAAATTGAAGCCAGTACTTTATACTGAAAAAAGTTACGTTGTTTGCGAAGGCGATCCAGTGGACGAAATGCTCTTCATAATGCGAGGAAAACTCGCTACTGTCACCACCAATGGTGGAAGAACTGGTTTCTTTAACTCGTCTGAGCTTAAAGCTGGCGATTTTTGTGGAGAGGAGCTTCTAACATGGGCCTTGGATCCTACACCTTCTTCAAACTTGCCTATCTCAACTAGCACAGTTCAAACTATTTCAGAAGTTGAAGCTTTTGCTCTTTTGCCTGATGATTTGAAGATTGTTGCTTCCCAATTTCGCCGTCTTATTAACAGAAAACAACTCCAACACACTTTCAGATTCTATTCCTTGCAATGGAGGACATGGGGAGCGCGATTCATACAAGTAGTTTGGCGTAGAAACAGGGAAAAAAGGGCTCAGAAATCGTTACGTGAAGCAGAAGAAAAACAACAACATGGTTCTCAAAATGATGAAGAAGGATCCTCACCAAGCTTTGCTACCACCGTATATGTACAAAGGTTTGCATCCAATGCATTAAGGCATTTGAGAAGTGGCAAGAAAATGCCACAACCAAAGAGAATGCTACCACTCTTGCCTATGAAACCAGCTGAGCCAGATTTCATCACTAAAAAAAACTATGATTAA	2100	0.3805	MSSKEKKFVRFEDWKSESSSFNIEKYDSSIDGLEKRKVRSSLSPANNESEKKSVCRRNVLDPQGPLLQKWNKIFVITCVMAISMDPLFFYIPVIDEKRKCLKLDGTLKITAGVLRTFFDLFYILRIVFQFRTGFIAPSSRVFGRGEPVDDPFAIAMRYLSSHFIIDILSILPLPQMVMLAMIPIPQRSVPCIAKDWLKYMIIAQYAPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSIESQLRCWHRQLKHTAFSDDSYLSCGRRVNSSVLSLLNNATTCPYTDPDEIIDPMVFNFGIFIDGLKSRVVESRTNFHHKFFYCFWWGLRNLSSVGQNLKTSTYIGEIIFAIFIAVFGLVLFALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMCHRMLPEYLKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPIFGNMDKQLLDAMCDKLKPVLYTEKSYVVCEGDPVDEMLFIMRGKLATVTTNGGRTGFFNSSELKAGDFCGEELLTWALDPTPSSNLPISTSTVQTISEVEAFALLPDDLKIVASQFRRLINRKQLQHTFRFYSLQWRTWGARFIQVVWRRNREKRAQKSLREAEEKQQHGSQNDEEGSSPSFATTVYVQRFASNALRHLRSGKKMPQPKRMLPLLPMKPAEPDFITKKNYD	699

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g02866	699	Gene3D	-	72	392	-	-
	Car07g02866	699	Pfam	Cyclic nucleotide-binding domain	488	578	IPR000595	-
	Car07g02866	699	Coils	Coil	698	699	-	-
	Car07g02866	699	Gene3D	Jelly Rolls	466	586	IPR014710	-
	Car07g02866	699	CDD	CAP_ED	468	600	IPR000595	-
	Car07g02866	699	Pfam	Ion transport protein	70	396	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Car07g02866	699	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN	7	695	-	-
	Car07g02866	699	MobiDBLite	consensus disorder prediction	626	648	-	-
	Car07g02866	699	SUPERFAMILY	Voltage-gated potassium channels	61	390	-	-
	Car07g02866	699	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	7	695	-	-
	Car07g02866	699	ProSiteProfiles	cAMP/cGMP binding motif profile.	468	552	IPR000595	-
	Car07g02866	699	Gene3D	Helix hairpin bin	395	459	-	-
	Car07g02866	699	MobiDBLite	consensus disorder prediction	626	640	-	-
	Car07g02866	699	SMART	cnmp_10	468	599	IPR000595	-
	Car07g02866	699	SUPERFAMILY	cAMP-binding domain-like	397	585	IPR018490	-
	Car07g02866	699	MobiDBLite	consensus disorder prediction	666	699	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g02866	Car-Chr7	54500689	54505508	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car07g02866	47	699	Ion Channels	AT1G01340	63.142	0.0	863

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g02866	K05391		-	gmx:100795201	1055.05